miRNA display CGI


Results 101 - 120 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 27747 0.67 0.580569
Target:  5'- gGUcACGCCggcGGUGCGACcguagugcCGCCAgcacAGCg -3'
miRNA:   3'- -CAuUGCGGa--CCGCGUUGu-------GCGGU----UCG- -5'
11910 5' -54.3 NC_003278.1 + 27845 0.71 0.335838
Target:  5'- --uACGCCgcaGGgGCuGCGCGgCAAGCg -3'
miRNA:   3'- cauUGCGGa--CCgCGuUGUGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 28758 0.66 0.608119
Target:  5'- -gAACGaCCUGcaccaGCGCuggauguucaucgauGACGCGgCCGAGCg -3'
miRNA:   3'- caUUGC-GGAC-----CGCG---------------UUGUGC-GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 28904 0.76 0.147581
Target:  5'- aUGACGCagccGGCGguACGCGCgAAGCg -3'
miRNA:   3'- cAUUGCGga--CCGCguUGUGCGgUUCG- -5'
11910 5' -54.3 NC_003278.1 + 28979 0.72 0.27929
Target:  5'- -gGGCGCC-GGCGUAAUcgccggcaucgauGCGCCAgAGCa -3'
miRNA:   3'- caUUGCGGaCCGCGUUG-------------UGCGGU-UCG- -5'
11910 5' -54.3 NC_003278.1 + 29042 0.71 0.344444
Target:  5'- -gGGCGCCcuugccGGCcuGCAGCACGCCGgaaauguacGGCu -3'
miRNA:   3'- caUUGCGGa-----CCG--CGUUGUGCGGU---------UCG- -5'
11910 5' -54.3 NC_003278.1 + 29235 0.73 0.251588
Target:  5'- -aAGCGCCUgcucGGCGUGGC-CGCCGGuGCg -3'
miRNA:   3'- caUUGCGGA----CCGCGUUGuGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 29829 0.67 0.569161
Target:  5'- --cGCGCCggcGGCGC----CGCCAAGUc -3'
miRNA:   3'- cauUGCGGa--CCGCGuuguGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 29897 0.71 0.327391
Target:  5'- -gAGgGCCUGGCGCuugaggauCGCGUCGcGCa -3'
miRNA:   3'- caUUgCGGACCGCGuu------GUGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 30012 0.68 0.513143
Target:  5'- cGUAACGCUgguugucGaGCGCgGACACGUCGcGCg -3'
miRNA:   3'- -CAUUGCGGa------C-CGCG-UUGUGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 30254 0.7 0.39934
Target:  5'- ----aGCUUGGCG-AGCuGCGCCAGGUa -3'
miRNA:   3'- cauugCGGACCGCgUUG-UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 30261 0.74 0.231851
Target:  5'- --uGCGCCUGGUGguGC-CGCUguccGAGCa -3'
miRNA:   3'- cauUGCGGACCGCguUGuGCGG----UUCG- -5'
11910 5' -54.3 NC_003278.1 + 30332 0.67 0.569161
Target:  5'- -gAGCGCCaGGaCGCcgucaACGCCGAcGCg -3'
miRNA:   3'- caUUGCGGaCC-GCGuug--UGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 30661 0.68 0.513143
Target:  5'- ----aGCCUgaccGGCGCGGCaACGCCGGaacuGCa -3'
miRNA:   3'- cauugCGGA----CCGCGUUG-UGCGGUU----CG- -5'
11910 5' -54.3 NC_003278.1 + 30802 0.7 0.368461
Target:  5'- -aAACGCCUGcugccgaucgcccaGCGCGACAgCGgCCAgAGCg -3'
miRNA:   3'- caUUGCGGAC--------------CGCGUUGU-GC-GGU-UCG- -5'
11910 5' -54.3 NC_003278.1 + 31032 0.68 0.470012
Target:  5'- -aAGCGCUgGGcCGCAGCgACGCUugcAGCa -3'
miRNA:   3'- caUUGCGGaCC-GCGUUG-UGCGGu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 31150 0.72 0.295186
Target:  5'- ---cCGCCUGGCGCccaGCGCCcucuGGUg -3'
miRNA:   3'- cauuGCGGACCGCGuugUGCGGu---UCG- -5'
11910 5' -54.3 NC_003278.1 + 31565 0.68 0.470012
Target:  5'- -aAACGCagggagGGCgGCGGCAUGCUuAAGCg -3'
miRNA:   3'- caUUGCGga----CCG-CGUUGUGCGG-UUCG- -5'
11910 5' -54.3 NC_003278.1 + 31591 0.73 0.251588
Target:  5'- -gAGCGCCaGGCGCGGauccaGCGCUAccagGGCg -3'
miRNA:   3'- caUUGCGGaCCGCGUUg----UGCGGU----UCG- -5'
11910 5' -54.3 NC_003278.1 + 31625 0.69 0.43891
Target:  5'- ----gGCCUGG-GCGGCGgCGCCGcaGGCu -3'
miRNA:   3'- cauugCGGACCgCGUUGU-GCGGU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.