Results 121 - 130 of 130 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11910 | 5' | -54.3 | NC_003278.1 | + | 31742 | 0.66 | 0.626567 |
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Target: 5'- -gAGCGCCUGGC-CggUGuC-CCGGGCa -3' miRNA: 3'- caUUGCGGACCGcGuuGU-GcGGUUCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 32161 | 0.68 | 0.481695 |
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Target: 5'- -cGACGCCcaguucgaUGGCGCAugAgGCCuacacauucuggacuGGCg -3' miRNA: 3'- caUUGCGG--------ACCGCGUugUgCGGu--------------UCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 32182 | 0.79 | 0.103794 |
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Target: 5'- -aAGCGCUuccugcuggUGGCGCGGCACGUCGAGa -3' miRNA: 3'- caUUGCGG---------ACCGCGUUGUGCGGUUCg -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 32382 | 0.67 | 0.569161 |
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Target: 5'- -cAGCGaCUGGCGCAGCcugaACGaCCucGCc -3' miRNA: 3'- caUUGCgGACCGCGUUG----UGC-GGuuCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 32597 | 0.72 | 0.310972 |
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Target: 5'- gGUGGCGCCUccGGCGguACcggGCGgCAAGUu -3' miRNA: 3'- -CAUUGCGGA--CCGCguUG---UGCgGUUCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 32619 | 0.66 | 0.615033 |
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Target: 5'- -gGGCGCCaucaucGGCGuCAAguCGCCcGGCc -3' miRNA: 3'- caUUGCGGa-----CCGC-GUUguGCGGuUCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 33161 | 0.71 | 0.335838 |
|
Target: 5'- -cGACgGCCUGaGCgacaGCGACugGCgCGAGCg -3' miRNA: 3'- caUUG-CGGAC-CG----CGUUGugCG-GUUCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 33470 | 0.78 | 0.116829 |
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Target: 5'- -gGAUGCCgcugcaGGCGCcGCugGCCAAGUa -3' miRNA: 3'- caUUGCGGa-----CCGCGuUGugCGGUUCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 34251 | 1.12 | 0.000363 |
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Target: 5'- uGUAACGCCUGGCGCAACACGCCAAGCg -3' miRNA: 3'- -CAUUGCGGACCGCGUUGUGCGGUUCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 34356 | 0.71 | 0.344444 |
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Target: 5'- --cGCGCaCUG-CaGCAGCAgGCCAAGCu -3' miRNA: 3'- cauUGCG-GACcG-CGUUGUgCGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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