miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 24817 0.7 0.39838
Target:  5'- cGUGAuCGCCUgGGCGUcgcccuuGGCGCGCagauAGCg -3'
miRNA:   3'- -CAUU-GCGGA-CCGCG-------UUGUGCGgu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 24713 0.71 0.335838
Target:  5'- -aGACGCUgcGCGUAGCugacuucgggaGCGCCAGGCu -3'
miRNA:   3'- caUUGCGGacCGCGUUG-----------UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 23637 0.66 0.603514
Target:  5'- -cGGCGCC-GGCccGCGGCgAUGCCcaAGGCa -3'
miRNA:   3'- caUUGCGGaCCG--CGUUG-UGCGG--UUCG- -5'
11910 5' -54.3 NC_003278.1 + 23282 0.67 0.535313
Target:  5'- cUGAUGCCcuUGGCGau-CACGUCGAcGCu -3'
miRNA:   3'- cAUUGCGG--ACCGCguuGUGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 23174 0.75 0.19629
Target:  5'- -gAGCGcCCUGcGCGCcgccCGCGCCGAGUg -3'
miRNA:   3'- caUUGC-GGAC-CGCGuu--GUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 22976 0.69 0.408043
Target:  5'- -cAGCgGCCUGGCGCugccGCAcaucaaccucaccCGCCAGGa -3'
miRNA:   3'- caUUG-CGGACCGCGu---UGU-------------GCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 22826 0.68 0.480627
Target:  5'- -cGGCGCUggcgGGCcugccgauccuGCAGCugGaCCAGGCc -3'
miRNA:   3'- caUUGCGGa---CCG-----------CGUUGugC-GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 22608 0.67 0.569161
Target:  5'- -cAGCGcCCUGG-GC-GCugGCCA-GCa -3'
miRNA:   3'- caUUGC-GGACCgCGuUGugCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 22124 0.66 0.638108
Target:  5'- -cGACGCUgaUGGaCGUAgGC-CGUCAAGCg -3'
miRNA:   3'- caUUGCGG--ACC-GCGU-UGuGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 22066 0.68 0.512044
Target:  5'- -cGGCGUgcugcugccggagCUGGCcgGCAGCGCGUUGAGCc -3'
miRNA:   3'- caUUGCG-------------GACCG--CGUUGUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 21904 0.66 0.592023
Target:  5'- --uGCGCCagGGCuuCGGCG-GCCAGGCg -3'
miRNA:   3'- cauUGCGGa-CCGc-GUUGUgCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 21866 0.66 0.638108
Target:  5'- cGgcGCGCCUGcGCGCc---CGCCu-GCa -3'
miRNA:   3'- -CauUGCGGAC-CGCGuuguGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 21761 0.72 0.310972
Target:  5'- -gAAUGaCCUGGCGCuucACACGCUccGGCc -3'
miRNA:   3'- caUUGC-GGACCGCGu--UGUGCGGu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 21636 0.67 0.524183
Target:  5'- -gGGCGaCCUGG-GCAAgaGCGCC-GGCg -3'
miRNA:   3'- caUUGC-GGACCgCGUUg-UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 21520 0.66 0.603514
Target:  5'- -cAAgGCCUGGUcaGCGcggGC-CGUCAGGCu -3'
miRNA:   3'- caUUgCGGACCG--CGU---UGuGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 21497 0.67 0.535313
Target:  5'- -gGAUGUCcGGCGUGAUGCGCaggucCAGGCg -3'
miRNA:   3'- caUUGCGGaCCGCGUUGUGCG-----GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 21474 0.67 0.535313
Target:  5'- -cGGCGCCggccaGGC-CGGCcCGCUggGCg -3'
miRNA:   3'- caUUGCGGa----CCGcGUUGuGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 21296 0.67 0.535313
Target:  5'- cGUcuCGCCgGGCGCG-C-CGCC-GGCg -3'
miRNA:   3'- -CAuuGCGGaCCGCGUuGuGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 21056 0.7 0.39934
Target:  5'- ---cCGCCgucgUGGCGguGCugGCC-GGCg -3'
miRNA:   3'- cauuGCGG----ACCGCguUGugCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 20459 0.68 0.513143
Target:  5'- -cAGCGC--GGCGCGaucuucaaggACAuCGCCGGGCa -3'
miRNA:   3'- caUUGCGgaCCGCGU----------UGU-GCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.