Results 61 - 80 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 20332 | 0.66 | 0.603514 |
Target: 5'- ---cCGCCUGG-GCAcguccaagGCGguaGCCAAGCu -3' miRNA: 3'- cauuGCGGACCgCGU--------UGUg--CGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 19692 | 0.66 | 0.638108 |
Target: 5'- -gAGCGCCUGacccaagccCGCAACACcuacaGCCGcGGCa -3' miRNA: 3'- caUUGCGGACc--------GCGUUGUG-----CGGU-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 19649 | 0.71 | 0.352323 |
Target: 5'- -cAACaGCCaGGCGCAGCGCuuacgcaaccucaGCCAgcAGCa -3' miRNA: 3'- caUUG-CGGaCCGCGUUGUG-------------CGGU--UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 19391 | 0.66 | 0.603514 |
Target: 5'- --cGCGCUggccGCGCAACAgGCaCGGGUg -3' miRNA: 3'- cauUGCGGac--CGCGUUGUgCG-GUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 19308 | 0.71 | 0.353206 |
Target: 5'- -gAGCGCCUGaaGCAGCucaACGCUcAGCa -3' miRNA: 3'- caUUGCGGACcgCGUUG---UGCGGuUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 19150 | 0.67 | 0.524183 |
Target: 5'- -gAugGagUGGCGCgAACGCGcCCGGGUa -3' miRNA: 3'- caUugCggACCGCG-UUGUGC-GGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 18779 | 0.68 | 0.502199 |
Target: 5'- aGUcGCGCaguUGGCgGCggUACGCCugcAGCg -3' miRNA: 3'- -CAuUGCGg--ACCG-CGuuGUGCGGu--UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 18523 | 0.66 | 0.615033 |
Target: 5'- gGUGACGCCcagcccGGCG-AAgACaCCGAGCa -3' miRNA: 3'- -CAUUGCGGa-----CCGCgUUgUGcGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 18198 | 0.69 | 0.43891 |
Target: 5'- cGgcACGCCgaggauGCGCGGuacCACGCcCAAGCg -3' miRNA: 3'- -CauUGCGGac----CGCGUU---GUGCG-GUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 17978 | 0.69 | 0.418841 |
Target: 5'- ---gUGCCUGG-GCAacaGCugGCgCAGGCa -3' miRNA: 3'- cauuGCGGACCgCGU---UGugCG-GUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 17183 | 0.67 | 0.579425 |
Target: 5'- -cAACGCCgccacugUGGUGguGCGggugaaGCCGGGCg -3' miRNA: 3'- caUUGCGG-------ACCGCguUGUg-----CGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 16745 | 0.69 | 0.428806 |
Target: 5'- cGUAcCGCCgccaacuGCGCGACugGCCgGAGUc -3' miRNA: 3'- -CAUuGCGGac-----CGCGUUGugCGG-UUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 16662 | 0.66 | 0.603514 |
Target: 5'- -cGACGcCCUGGuCGCAcgucacCGCGaCGAGCu -3' miRNA: 3'- caUUGC-GGACC-GCGUu-----GUGCgGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 16627 | 0.75 | 0.190847 |
Target: 5'- -gAGCGCgaUUGGCGCGAC-CGCCA-GCu -3' miRNA: 3'- caUUGCG--GACCGCGUUGuGCGGUuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 16288 | 0.72 | 0.271963 |
Target: 5'- -cGACGCaagGGCGCGGuggcucugucgauCGCGCUGAGCa -3' miRNA: 3'- caUUGCGga-CCGCGUU-------------GUGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 16172 | 0.66 | 0.615033 |
Target: 5'- -gGGCGCCgcgcugGGUGCGgaaggcgcGCACGUCGcucugcugAGCg -3' miRNA: 3'- caUUGCGGa-----CCGCGU--------UGUGCGGU--------UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 15884 | 0.74 | 0.21943 |
Target: 5'- --uGCGCCUGGCuGUugAugGCGCCAuuGGCc -3' miRNA: 3'- cauUGCGGACCG-CG--UugUGCGGU--UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 15514 | 0.67 | 0.535313 |
Target: 5'- --cAUGCC-GG-GCAugGCGCCGAGg -3' miRNA: 3'- cauUGCGGaCCgCGUugUGCGGUUCg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 15324 | 0.72 | 0.272689 |
Target: 5'- -cGACGCC-GGCggaguacuucaGCGAguCGCCGAGCa -3' miRNA: 3'- caUUGCGGaCCG-----------CGUUguGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 14753 | 0.66 | 0.638108 |
Target: 5'- ---cCGCC-GGCaGCAACccgaccACGCUggGCg -3' miRNA: 3'- cauuGCGGaCCG-CGUUG------UGCGGuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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