miRNA display CGI


Results 81 - 100 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 14461 0.7 0.3712
Target:  5'- -cGGCGCC-GGC-CAGCAcCGCCAcgacGGCg -3'
miRNA:   3'- caUUGCGGaCCGcGUUGU-GCGGU----UCG- -5'
11910 5' -54.3 NC_003278.1 + 14302 0.72 0.280031
Target:  5'- -gGACGCCggcgaaGGCGCggUACaucagGCCGAGUg -3'
miRNA:   3'- caUUGCGGa-----CCGCGuuGUG-----CGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 14221 0.77 0.12759
Target:  5'- gGUGACGCC-GGCG--GCGCGCCcGGCg -3'
miRNA:   3'- -CAUUGCGGaCCGCguUGUGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 14057 0.69 0.428806
Target:  5'- ----gGCCUGGC-CGGCGCcgaggcccuggGCCAGGCc -3'
miRNA:   3'- cauugCGGACCGcGUUGUG-----------CGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 14018 0.67 0.535313
Target:  5'- ---cCGCCUGgaccuGCGCAuCACGCCGgacauccuGGCc -3'
miRNA:   3'- cauuGCGGAC-----CGCGUuGUGCGGU--------UCG- -5'
11910 5' -54.3 NC_003278.1 + 13882 0.69 0.43891
Target:  5'- aUGGCGCC-GGCGCucuuGCccagguCGCCcAGCa -3'
miRNA:   3'- cAUUGCGGaCCGCGu---UGu-----GCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 13846 0.79 0.092137
Target:  5'- --uGCGCCggGGCGCug-GCGCCGAGCa -3'
miRNA:   3'- cauUGCGGa-CCGCGuugUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 13615 0.67 0.569161
Target:  5'- -gAGCGCCUGGCcGCcgaAGCccugGCGCagauuGAGCg -3'
miRNA:   3'- caUUGCGGACCG-CG---UUG----UGCGg----UUCG- -5'
11910 5' -54.3 NC_003278.1 + 13444 0.78 0.113099
Target:  5'- -cAACGCgCUgccggccagcuccGGCaGCAGCACGCCGGGCa -3'
miRNA:   3'- caUUGCG-GA-------------CCG-CGUUGUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 12940 0.66 0.638108
Target:  5'- ----aGCCagaGGUGCAGCacgGCGCCGcGCg -3'
miRNA:   3'- cauugCGGa--CCGCGUUG---UGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 12871 0.69 0.428806
Target:  5'- -aAAUGCuCUGGCGcCAGCGgGUCAacgaGGCg -3'
miRNA:   3'- caUUGCG-GACCGC-GUUGUgCGGU----UCG- -5'
11910 5' -54.3 NC_003278.1 + 12714 0.69 0.442989
Target:  5'- -cAGCGCC-GGCGCgAGCACcggcuucagguuguuGCCGAGg -3'
miRNA:   3'- caUUGCGGaCCGCG-UUGUG---------------CGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 12509 0.71 0.319924
Target:  5'- gGUAGCGgugcuggucgccauCCUGGCgggugagguugauguGCGGCAgCGCCAGGCc -3'
miRNA:   3'- -CAUUGC--------------GGACCG---------------CGUUGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 12305 0.7 0.362125
Target:  5'- cGUAGCugaGCgUGGCGCugcCACGCUguAGGCg -3'
miRNA:   3'- -CAUUG---CGgACCGCGuu-GUGCGG--UUCG- -5'
11910 5' -54.3 NC_003278.1 + 12002 0.66 0.626567
Target:  5'- aGUAGCGCaggcGGCGCGGCuuGCUcuGGUc -3'
miRNA:   3'- -CAUUGCGga--CCGCGUUGugCGGu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 10798 0.67 0.585145
Target:  5'- ----aGCCUGGCGCucccgaagucagcuACGCGC--AGCg -3'
miRNA:   3'- cauugCGGACCGCGu-------------UGUGCGguUCG- -5'
11910 5' -54.3 NC_003278.1 + 10701 0.7 0.3712
Target:  5'- --cGCGCCaaGgGCGACGC-CCAGGCg -3'
miRNA:   3'- cauUGCGGacCgCGUUGUGcGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 10356 0.67 0.546525
Target:  5'- ---uCGCCaacGGCGagcuGCugGCCGAGUg -3'
miRNA:   3'- cauuGCGGa--CCGCgu--UGugCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 10175 0.66 0.638108
Target:  5'- gGUAcCGcCCUGGUauccGCAGCAgCGCCAAc- -3'
miRNA:   3'- -CAUuGC-GGACCG----CGUUGU-GCGGUUcg -5'
11910 5' -54.3 NC_003278.1 + 9590 0.69 0.434852
Target:  5'- ---cCGaCCUGGaccaacagcggcaGCAGCuGCGCCAGGCg -3'
miRNA:   3'- cauuGC-GGACCg------------CGUUG-UGCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.