miRNA display CGI


Results 101 - 120 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 9461 0.69 0.409018
Target:  5'- ---uCGaCCUGGCGCAgGCcCGCCuGGCc -3'
miRNA:   3'- cauuGC-GGACCGCGU-UGuGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 9362 0.67 0.556679
Target:  5'- --uGCGCCgaGGC-CAGCgcgugagccuucuGCGCCAGGUg -3'
miRNA:   3'- cauUGCGGa-CCGcGUUG-------------UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 9137 0.68 0.480627
Target:  5'- -cAGCGCCUGGgcuaCGuCAGCGugcaggccuuCGCCGAGUc -3'
miRNA:   3'- caUUGCGGACC----GC-GUUGU----------GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 9047 0.72 0.272689
Target:  5'- -cAGCGCCUGGCG-AACGCucGCCAGa- -3'
miRNA:   3'- caUUGCGGACCGCgUUGUG--CGGUUcg -5'
11910 5' -54.3 NC_003278.1 + 9010 0.7 0.380429
Target:  5'- ---uCGCCcgGGCggcuaugccgGCGGCAcCGCCGAGCa -3'
miRNA:   3'- cauuGCGGa-CCG----------CGUUGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 8707 0.68 0.480627
Target:  5'- -cGACGCCccUGGCGU-ACAgGUCGAGg -3'
miRNA:   3'- caUUGCGG--ACCGCGuUGUgCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 8412 0.67 0.524183
Target:  5'- gGUGGCGCCgcaGaGCGCGuuugugcauuGCGCGUacauCGAGCg -3'
miRNA:   3'- -CAUUGCGGa--C-CGCGU----------UGUGCG----GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 8363 0.67 0.577141
Target:  5'- --uGCGCCUGGUcugcuaccagcgcuGCGGCGCccgcuuccGCCGcAGCg -3'
miRNA:   3'- cauUGCGGACCG--------------CGUUGUG--------CGGU-UCG- -5'
11910 5' -54.3 NC_003278.1 + 8049 0.67 0.535313
Target:  5'- ---cUGCUcGGCGCcuGGCugGCCAccGGCa -3'
miRNA:   3'- cauuGCGGaCCGCG--UUGugCGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 7006 0.72 0.28753
Target:  5'- -cGAUGCCgUGGUGCAGCAgCGCgauGGCg -3'
miRNA:   3'- caUUGCGG-ACCGCGUUGU-GCGgu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 6524 0.67 0.535313
Target:  5'- cGUcAUGCuCUGGCGCAuCgAUGCC-GGCg -3'
miRNA:   3'- -CAuUGCG-GACCGCGUuG-UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 6350 0.68 0.513143
Target:  5'- -gAACGCCuaUGaGCuGCAGCuCGCCcAGCu -3'
miRNA:   3'- caUUGCGG--AC-CG-CGUUGuGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 6261 0.68 0.47956
Target:  5'- --cGCGCCgcugccGGUgaagaucgcaccgGCGGcCACGCCGAGCa -3'
miRNA:   3'- cauUGCGGa-----CCG-------------CGUU-GUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 5703 0.69 0.428806
Target:  5'- -cGGCGCCgccGGCGCGGCuguuguCGCUgcggucggccucGAGCa -3'
miRNA:   3'- caUUGCGGa--CCGCGUUGu-----GCGG------------UUCG- -5'
11910 5' -54.3 NC_003278.1 + 5610 0.69 0.418841
Target:  5'- -aGGC-CCUGcuGCGCGACgcgauccucaaGCGCCAGGCc -3'
miRNA:   3'- caUUGcGGAC--CGCGUUG-----------UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 5266 0.67 0.546525
Target:  5'- -cAGCGgcaccaCCaGGCGCAGCGCGUCGaccagGGCc -3'
miRNA:   3'- caUUGC------GGaCCGCGUUGUGCGGU-----UCG- -5'
11910 5' -54.3 NC_003278.1 + 5263 0.88 0.021215
Target:  5'- -cGACGCCuaccUGGCGCAGCuCGCCAAGCu -3'
miRNA:   3'- caUUGCGG----ACCGCGUUGuGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 5019 0.66 0.592023
Target:  5'- --cGCGaCCUGGgugaGCAACuCGgCGAGCa -3'
miRNA:   3'- cauUGC-GGACCg---CGUUGuGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 4702 0.69 0.418841
Target:  5'- ---cCGCuCUGGcCGCuguCGCGCUggGCg -3'
miRNA:   3'- cauuGCG-GACC-GCGuu-GUGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 4655 0.69 0.449148
Target:  5'- gGUGG-GCUUGGcCGUuguACAgGCCGAGCa -3'
miRNA:   3'- -CAUUgCGGACC-GCGu--UGUgCGGUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.