Results 121 - 130 of 130 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11910 | 5' | -54.3 | NC_003278.1 | + | 4529 | 0.66 | 0.638108 |
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Target: 5'- aGUGG-GCCUGGC-CGGCuggugaguucgGCGCCuauGGCg -3' miRNA: 3'- -CAUUgCGGACCGcGUUG-----------UGCGGu--UCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 4367 | 0.7 | 0.39934 |
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Target: 5'- ---uCGCaccagagGGCGCuGgGCGCCAGGCg -3' miRNA: 3'- cauuGCGga-----CCGCGuUgUGCGGUUCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 4164 | 0.66 | 0.638108 |
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Target: 5'- cUAGC-CUUGGCGCcGC-CGCCuugAGGCu -3' miRNA: 3'- cAUUGcGGACCGCGuUGuGCGG---UUCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 3943 | 0.75 | 0.175309 |
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Target: 5'- --cGCGCCUGGCGCucaaGCuGCCGAuGCa -3' miRNA: 3'- cauUGCGGACCGCGuug-UG-CGGUU-CG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 3229 | 0.69 | 0.449148 |
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Target: 5'- ----gGCCggcGGCGuCGAUAuCGCCGGGCa -3' miRNA: 3'- cauugCGGa--CCGC-GUUGU-GCGGUUCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 3225 | 0.66 | 0.626567 |
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Target: 5'- gGUGACGaUCUGGCGCcaGAUGCGguCCucGCa -3' miRNA: 3'- -CAUUGC-GGACCGCG--UUGUGC--GGuuCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 2546 | 0.68 | 0.513143 |
|
Target: 5'- cGUGccGCGCaCUGGC-CGACaccGCGCC-GGCg -3' miRNA: 3'- -CAU--UGCG-GACCGcGUUG---UGCGGuUCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 2057 | 0.66 | 0.603514 |
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Target: 5'- -cGGCGCCUGcaGCgGCAucCGCGuacCCAGGCg -3' miRNA: 3'- caUUGCGGAC--CG-CGUu-GUGC---GGUUCG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 1761 | 0.72 | 0.272689 |
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Target: 5'- -cAGCGCC-GuGCGCAGCGCGUCGAuGUc -3' miRNA: 3'- caUUGCGGaC-CGCGUUGUGCGGUU-CG- -5' |
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| 11910 | 5' | -54.3 | NC_003278.1 | + | 1265 | 0.85 | 0.035892 |
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Target: 5'- -gAACGCUUGGCGUGuuGCGCCAGGCg -3' miRNA: 3'- caUUGCGGACCGCGUugUGCGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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