Results 61 - 80 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 12871 | 0.69 | 0.428806 |
Target: 5'- -aAAUGCuCUGGCGcCAGCGgGUCAacgaGGCg -3' miRNA: 3'- caUUGCG-GACCGC-GUUGUgCGGU----UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 30802 | 0.7 | 0.368461 |
Target: 5'- -aAACGCCUGcugccgaucgcccaGCGCGACAgCGgCCAgAGCg -3' miRNA: 3'- caUUGCGGAC--------------CGCGUUGU-GC-GGU-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 10701 | 0.7 | 0.3712 |
Target: 5'- --cGCGCCaaGgGCGACGC-CCAGGCg -3' miRNA: 3'- cauUGCGGacCgCGUUGUGcGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 9010 | 0.7 | 0.380429 |
Target: 5'- ---uCGCCcgGGCggcuaugccgGCGGCAcCGCCGAGCa -3' miRNA: 3'- cauuGCGGa-CCG----------CGUUGU-GCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 21056 | 0.7 | 0.39934 |
Target: 5'- ---cCGCCgucgUGGCGguGCugGCC-GGCg -3' miRNA: 3'- cauuGCGG----ACCGCguUGugCGGuUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 22976 | 0.69 | 0.408043 |
Target: 5'- -cAGCgGCCUGGCGCugccGCAcaucaaccucaccCGCCAGGa -3' miRNA: 3'- caUUG-CGGACCGCGu---UGU-------------GCGGUUCg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 9461 | 0.69 | 0.409018 |
Target: 5'- ---uCGaCCUGGCGCAgGCcCGCCuGGCc -3' miRNA: 3'- cauuGC-GGACCGCGU-UGuGCGGuUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 5610 | 0.69 | 0.418841 |
Target: 5'- -aGGC-CCUGcuGCGCGACgcgauccucaaGCGCCAGGCc -3' miRNA: 3'- caUUGcGGAC--CGCGUUG-----------UGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 26009 | 0.67 | 0.55781 |
Target: 5'- ----gGCCUGGCGgGAaa-GCUggGCg -3' miRNA: 3'- cauugCGGACCGCgUUgugCGGuuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 22608 | 0.67 | 0.569161 |
Target: 5'- -cAGCGcCCUGG-GC-GCugGCCA-GCa -3' miRNA: 3'- caUUGC-GGACCgCGuUGugCGGUuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 27747 | 0.67 | 0.580569 |
Target: 5'- gGUcACGCCggcGGUGCGACcguagugcCGCCAgcacAGCg -3' miRNA: 3'- -CAuUGCGGa--CCGCGUUGu-------GCGGU----UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 25274 | 0.67 | 0.580569 |
Target: 5'- -cGGCGCUUGaCGaCGACACGCUcGGUc -3' miRNA: 3'- caUUGCGGACcGC-GUUGUGCGGuUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 21904 | 0.66 | 0.592023 |
Target: 5'- --uGCGCCagGGCuuCGGCG-GCCAGGCg -3' miRNA: 3'- cauUGCGGa-CCGc-GUUGUgCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 23637 | 0.66 | 0.603514 |
Target: 5'- -cGGCGCC-GGCccGCGGCgAUGCCcaAGGCa -3' miRNA: 3'- caUUGCGGaCCG--CGUUG-UGCGG--UUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 16172 | 0.66 | 0.615033 |
Target: 5'- -gGGCGCCgcgcugGGUGCGgaaggcgcGCACGUCGcucugcugAGCg -3' miRNA: 3'- caUUGCGGa-----CCGCGU--------UGUGCGGU--------UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 12002 | 0.66 | 0.626567 |
Target: 5'- aGUAGCGCaggcGGCGCGGCuuGCUcuGGUc -3' miRNA: 3'- -CAUUGCGga--CCGCGUUGugCGGu-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 4164 | 0.66 | 0.638108 |
Target: 5'- cUAGC-CUUGGCGCcGC-CGCCuugAGGCu -3' miRNA: 3'- cAUUGcGGACCGCGuUGuGCGG---UUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 10175 | 0.66 | 0.638108 |
Target: 5'- gGUAcCGcCCUGGUauccGCAGCAgCGCCAAc- -3' miRNA: 3'- -CAUuGC-GGACCG----CGUUGU-GCGGUUcg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 12940 | 0.66 | 0.638108 |
Target: 5'- ----aGCCagaGGUGCAGCacgGCGCCGcGCg -3' miRNA: 3'- cauugCGGa--CCGCGUUG---UGCGGUuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 34251 | 1.12 | 0.000363 |
Target: 5'- uGUAACGCCUGGCGCAACACGCCAAGCg -3' miRNA: 3'- -CAUUGCGGACCGCGUUGUGCGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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