Results 101 - 120 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 21904 | 0.66 | 0.592023 |
Target: 5'- --uGCGCCagGGCuuCGGCG-GCCAGGCg -3' miRNA: 3'- cauUGCGGa-CCGc-GUUGUgCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 23637 | 0.66 | 0.603514 |
Target: 5'- -cGGCGCC-GGCccGCGGCgAUGCCcaAGGCa -3' miRNA: 3'- caUUGCGGaCCG--CGUUG-UGCGG--UUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 16172 | 0.66 | 0.615033 |
Target: 5'- -gGGCGCCgcgcugGGUGCGgaaggcgcGCACGUCGcucugcugAGCg -3' miRNA: 3'- caUUGCGGa-----CCGCGU--------UGUGCGGU--------UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 12002 | 0.66 | 0.626567 |
Target: 5'- aGUAGCGCaggcGGCGCGGCuuGCUcuGGUc -3' miRNA: 3'- -CAUUGCGga--CCGCGUUGugCGGu-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 4164 | 0.66 | 0.638108 |
Target: 5'- cUAGC-CUUGGCGCcGC-CGCCuugAGGCu -3' miRNA: 3'- cAUUGcGGACCGCGuUGuGCGG---UUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 10175 | 0.66 | 0.638108 |
Target: 5'- gGUAcCGcCCUGGUauccGCAGCAgCGCCAAc- -3' miRNA: 3'- -CAUuGC-GGACCG----CGUUGU-GCGGUUcg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 12940 | 0.66 | 0.638108 |
Target: 5'- ----aGCCagaGGUGCAGCacgGCGCCGcGCg -3' miRNA: 3'- cauugCGGa--CCGCGUUG---UGCGGUuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 26464 | 0.67 | 0.546525 |
Target: 5'- gGUAucguCGaUCUGGCG-AGCGuuCGCCAGGCg -3' miRNA: 3'- -CAUu---GC-GGACCGCgUUGU--GCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 5266 | 0.67 | 0.546525 |
Target: 5'- -cAGCGgcaccaCCaGGCGCAGCGCGUCGaccagGGCc -3' miRNA: 3'- caUUGC------GGaCCGCGUUGUGCGGU-----UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 8707 | 0.68 | 0.480627 |
Target: 5'- -cGACGCCccUGGCGU-ACAgGUCGAGg -3' miRNA: 3'- caUUGCGG--ACCGCGuUGUgCGGUUCg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 32161 | 0.68 | 0.481695 |
Target: 5'- -cGACGCCcaguucgaUGGCGCAugAgGCCuacacauucuggacuGGCg -3' miRNA: 3'- caUUGCGG--------ACCGCGUugUgCGGu--------------UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 18779 | 0.68 | 0.502199 |
Target: 5'- aGUcGCGCaguUGGCgGCggUACGCCugcAGCg -3' miRNA: 3'- -CAuUGCGg--ACCG-CGuuGUGCGGu--UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 2546 | 0.68 | 0.513143 |
Target: 5'- cGUGccGCGCaCUGGC-CGACaccGCGCC-GGCg -3' miRNA: 3'- -CAU--UGCG-GACCGcGUUG---UGCGGuUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 26290 | 0.68 | 0.513143 |
Target: 5'- -cAGCGCCUuGUGUA--GCGCCGGGUc -3' miRNA: 3'- caUUGCGGAcCGCGUugUGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 30012 | 0.68 | 0.513143 |
Target: 5'- cGUAACGCUgguugucGaGCGCgGACACGUCGcGCg -3' miRNA: 3'- -CAUUGCGGa------C-CGCG-UUGUGCGGUuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 8412 | 0.67 | 0.524183 |
Target: 5'- gGUGGCGCCgcaGaGCGCGuuugugcauuGCGCGUacauCGAGCg -3' miRNA: 3'- -CAUUGCGGa--C-CGCGU----------UGUGCG----GUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 15514 | 0.67 | 0.535313 |
Target: 5'- --cAUGCC-GG-GCAugGCGCCGAGg -3' miRNA: 3'- cauUGCGGaCCgCGUugUGCGGUUCg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 21296 | 0.67 | 0.535313 |
Target: 5'- cGUcuCGCCgGGCGCG-C-CGCC-GGCg -3' miRNA: 3'- -CAuuGCGGaCCGCGUuGuGCGGuUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 23282 | 0.67 | 0.535313 |
Target: 5'- cUGAUGCCcuUGGCGau-CACGUCGAcGCu -3' miRNA: 3'- cAUUGCGG--ACCGCguuGUGCGGUU-CG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 21497 | 0.67 | 0.535313 |
Target: 5'- -gGAUGUCcGGCGUGAUGCGCaggucCAGGCg -3' miRNA: 3'- caUUGCGGaCCGCGUUGUGCG-----GUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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