Results 41 - 60 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 27469 | 0.69 | 0.418841 |
Target: 5'- ---gUGCCggUGGC-CAGCcagGCGCCGAGCa -3' miRNA: 3'- cauuGCGG--ACCGcGUUG---UGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 15514 | 0.67 | 0.535313 |
Target: 5'- --cAUGCC-GG-GCAugGCGCCGAGg -3' miRNA: 3'- cauUGCGGaCCgCGUugUGCGGUUCg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 10175 | 0.66 | 0.638108 |
Target: 5'- gGUAcCGcCCUGGUauccGCAGCAgCGCCAAc- -3' miRNA: 3'- -CAUuGC-GGACCG----CGUUGU-GCGGUUcg -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 14057 | 0.69 | 0.428806 |
Target: 5'- ----gGCCUGGC-CGGCGCcgaggcccuggGCCAGGCc -3' miRNA: 3'- cauugCGGACCGcGUUGUG-----------CGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 12940 | 0.66 | 0.638108 |
Target: 5'- ----aGCCagaGGUGCAGCacgGCGCCGcGCg -3' miRNA: 3'- cauugCGGa--CCGCGUUG---UGCGGUuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 28904 | 0.76 | 0.147581 |
Target: 5'- aUGACGCagccGGCGguACGCGCgAAGCg -3' miRNA: 3'- cAUUGCGga--CCGCguUGUGCGgUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 12002 | 0.66 | 0.626567 |
Target: 5'- aGUAGCGCaggcGGCGCGGCuuGCUcuGGUc -3' miRNA: 3'- -CAUUGCGga--CCGCGUUGugCGGu-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 16288 | 0.72 | 0.271963 |
Target: 5'- -cGACGCaagGGCGCGGuggcucugucgauCGCGCUGAGCa -3' miRNA: 3'- caUUGCGga-CCGCGUU-------------GUGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 14302 | 0.72 | 0.280031 |
Target: 5'- -gGACGCCggcgaaGGCGCggUACaucagGCCGAGUg -3' miRNA: 3'- caUUGCGGa-----CCGCGuuGUG-----CGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 12509 | 0.71 | 0.319924 |
Target: 5'- gGUAGCGgugcuggucgccauCCUGGCgggugagguugauguGCGGCAgCGCCAGGCc -3' miRNA: 3'- -CAUUGC--------------GGACCG---------------CGUUGU-GCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 24713 | 0.71 | 0.335838 |
Target: 5'- -aGACGCUgcGCGUAGCugacuucgggaGCGCCAGGCu -3' miRNA: 3'- caUUGCGGacCGCGUUG-----------UGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 24817 | 0.7 | 0.39838 |
Target: 5'- cGUGAuCGCCUgGGCGUcgcccuuGGCGCGCagauAGCg -3' miRNA: 3'- -CAUU-GCGGA-CCGCG-------UUGUGCGgu--UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 17978 | 0.69 | 0.418841 |
Target: 5'- ---gUGCCUGG-GCAacaGCugGCgCAGGCa -3' miRNA: 3'- cauuGCGGACCgCGU---UGugCG-GUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 13882 | 0.69 | 0.43891 |
Target: 5'- aUGGCGCC-GGCGCucuuGCccagguCGCCcAGCa -3' miRNA: 3'- cAUUGCGGaCCGCGu---UGu-----GCGGuUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 3229 | 0.69 | 0.449148 |
Target: 5'- ----gGCCggcGGCGuCGAUAuCGCCGGGCa -3' miRNA: 3'- cauugCGGa--CCGC-GUUGU-GCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 18779 | 0.68 | 0.502199 |
Target: 5'- aGUcGCGCaguUGGCgGCggUACGCCugcAGCg -3' miRNA: 3'- -CAuUGCGg--ACCG-CGuuGUGCGGu--UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 30012 | 0.68 | 0.513143 |
Target: 5'- cGUAACGCUgguugucGaGCGCgGACACGUCGcGCg -3' miRNA: 3'- -CAUUGCGGa------C-CGCG-UUGUGCGGUuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 21497 | 0.67 | 0.535313 |
Target: 5'- -gGAUGUCcGGCGUGAUGCGCaggucCAGGCg -3' miRNA: 3'- caUUGCGGaCCGCGUUGUGCG-----GUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 26009 | 0.67 | 0.55781 |
Target: 5'- ----gGCCUGGCGgGAaa-GCUggGCg -3' miRNA: 3'- cauugCGGACCGCgUUgugCGGuuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 21904 | 0.66 | 0.592023 |
Target: 5'- --uGCGCCagGGCuuCGGCG-GCCAGGCg -3' miRNA: 3'- cauUGCGGa-CCGc-GUUGUgCGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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