miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 6261 0.68 0.47956
Target:  5'- --cGCGCCgcugccGGUgaagaucgcaccgGCGGcCACGCCGAGCa -3'
miRNA:   3'- cauUGCGGa-----CCG-------------CGUU-GUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 16288 0.72 0.271963
Target:  5'- -cGACGCaagGGCGCGGuggcucugucgauCGCGCUGAGCa -3'
miRNA:   3'- caUUGCGga-CCGCGUU-------------GUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 16745 0.69 0.428806
Target:  5'- cGUAcCGCCgccaacuGCGCGACugGCCgGAGUc -3'
miRNA:   3'- -CAUuGCGGac-----CGCGUUGugCGG-UUCG- -5'
11910 5' -54.3 NC_003278.1 + 9590 0.69 0.434852
Target:  5'- ---cCGaCCUGGaccaacagcggcaGCAGCuGCGCCAGGCg -3'
miRNA:   3'- cauuGC-GGACCg------------CGUUG-UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 23174 0.75 0.19629
Target:  5'- -gAGCGcCCUGcGCGCcgccCGCGCCGAGUg -3'
miRNA:   3'- caUUGC-GGAC-CGCGuu--GUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 31032 0.68 0.470012
Target:  5'- -aAGCGCUgGGcCGCAGCgACGCUugcAGCa -3'
miRNA:   3'- caUUGCGGaCC-GCGUUG-UGCGGu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 28758 0.66 0.608119
Target:  5'- -gAACGaCCUGcaccaGCGCuggauguucaucgauGACGCGgCCGAGCg -3'
miRNA:   3'- caUUGC-GGAC-----CGCG---------------UUGUGC-GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 31565 0.68 0.470012
Target:  5'- -aAACGCagggagGGCgGCGGCAUGCUuAAGCg -3'
miRNA:   3'- caUUGCGga----CCG-CGUUGUGCGG-UUCG- -5'
11910 5' -54.3 NC_003278.1 + 31625 0.69 0.43891
Target:  5'- ----gGCCUGG-GCGGCGgCGCCGcaGGCu -3'
miRNA:   3'- cauugCGGACCgCGUUGU-GCGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 5019 0.66 0.592023
Target:  5'- --cGCGaCCUGGgugaGCAACuCGgCGAGCa -3'
miRNA:   3'- cauUGC-GGACCg---CGUUGuGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 21520 0.66 0.603514
Target:  5'- -cAAgGCCUGGUcaGCGcggGC-CGUCAGGCu -3'
miRNA:   3'- caUUgCGGACCG--CGU---UGuGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 2057 0.66 0.603514
Target:  5'- -cGGCGCCUGcaGCgGCAucCGCGuacCCAGGCg -3'
miRNA:   3'- caUUGCGGAC--CG-CGUu-GUGC---GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 16662 0.66 0.603514
Target:  5'- -cGACGcCCUGGuCGCAcgucacCGCGaCGAGCu -3'
miRNA:   3'- caUUGC-GGACC-GCGUu-----GUGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 19391 0.66 0.603514
Target:  5'- --cGCGCUggccGCGCAACAgGCaCGGGUg -3'
miRNA:   3'- cauUGCGGac--CGCGUUGUgCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 26945 0.66 0.615033
Target:  5'- --cACaCCUGGcCGCAcgACAUGCCGaagucGGCg -3'
miRNA:   3'- cauUGcGGACC-GCGU--UGUGCGGU-----UCG- -5'
11910 5' -54.3 NC_003278.1 + 18523 0.66 0.615033
Target:  5'- gGUGACGCCcagcccGGCG-AAgACaCCGAGCa -3'
miRNA:   3'- -CAUUGCGGa-----CCGCgUUgUGcGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 3225 0.66 0.626567
Target:  5'- gGUGACGaUCUGGCGCcaGAUGCGguCCucGCa -3'
miRNA:   3'- -CAUUGC-GGACCGCG--UUGUGC--GGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 20332 0.66 0.603514
Target:  5'- ---cCGCCUGG-GCAcguccaagGCGguaGCCAAGCu -3'
miRNA:   3'- cauuGCGGACCgCGU--------UGUg--CGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 33161 0.71 0.335838
Target:  5'- -cGACgGCCUGaGCgacaGCGACugGCgCGAGCg -3'
miRNA:   3'- caUUG-CGGAC-CG----CGUUGugCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 27845 0.71 0.335838
Target:  5'- --uACGCCgcaGGgGCuGCGCGgCAAGCg -3'
miRNA:   3'- cauUGCGGa--CCgCGuUGUGCgGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.