Results 121 - 130 of 130 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 6524 | 0.67 | 0.535313 |
Target: 5'- cGUcAUGCuCUGGCGCAuCgAUGCC-GGCg -3' miRNA: 3'- -CAuUGCG-GACCGCGUuG-UGCGGuUCG- -5' |
|||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 8049 | 0.67 | 0.535313 |
Target: 5'- ---cUGCUcGGCGCcuGGCugGCCAccGGCa -3' miRNA: 3'- cauuGCGGaCCGCG--UUGugCGGU--UCG- -5' |
|||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 14018 | 0.67 | 0.535313 |
Target: 5'- ---cCGCCUGgaccuGCGCAuCACGCCGgacauccuGGCc -3' miRNA: 3'- cauuGCGGAC-----CGCGUuGUGCGGU--------UCG- -5' |
|||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 21474 | 0.67 | 0.535313 |
Target: 5'- -cGGCGCCggccaGGC-CGGCcCGCUggGCg -3' miRNA: 3'- caUUGCGGa----CCGcGUUGuGCGGuuCG- -5' |
|||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 10356 | 0.67 | 0.546525 |
Target: 5'- ---uCGCCaacGGCGagcuGCugGCCGAGUg -3' miRNA: 3'- cauuGCGGa--CCGCgu--UGugCGGUUCG- -5' |
|||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 9362 | 0.67 | 0.556679 |
Target: 5'- --uGCGCCgaGGC-CAGCgcgugagccuucuGCGCCAGGUg -3' miRNA: 3'- cauUGCGGa-CCGcGUUG-------------UGCGGUUCG- -5' |
|||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 13615 | 0.67 | 0.569161 |
Target: 5'- -gAGCGCCUGGCcGCcgaAGCccugGCGCagauuGAGCg -3' miRNA: 3'- caUUGCGGACCG-CG---UUG----UGCGg----UUCG- -5' |
|||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 32382 | 0.67 | 0.569161 |
Target: 5'- -cAGCGaCUGGCGCAGCcugaACGaCCucGCc -3' miRNA: 3'- caUUGCgGACCGCGUUG----UGC-GGuuCG- -5' |
|||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 29829 | 0.67 | 0.569161 |
Target: 5'- --cGCGCCggcGGCGC----CGCCAAGUc -3' miRNA: 3'- cauUGCGGa--CCGCGuuguGCGGUUCG- -5' |
|||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 19692 | 0.66 | 0.638108 |
Target: 5'- -gAGCGCCUGacccaagccCGCAACACcuacaGCCGcGGCa -3' miRNA: 3'- caUUGCGGACc--------GCGUUGUG-----CGGU-UCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home