miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11911 5' -60 NC_003278.1 + 4281 0.66 0.343775
Target:  5'- -cGCGCCCUACAauccCGCUugaUUGCUGGg -3'
miRNA:   3'- gaCGCGGGAUGUcuc-GCGG---GACGACU- -5'
11911 5' -60 NC_003278.1 + 27116 0.66 0.342937
Target:  5'- -cGCGCUCUGCGGcgccaccuucaccGGCuCCCUgaGCUGGg -3'
miRNA:   3'- gaCGCGGGAUGUC-------------UCGcGGGA--CGACU- -5'
11911 5' -60 NC_003278.1 + 31743 0.66 0.335462
Target:  5'- -aGCGCCUgGCcggugucccGGGCaCCCUGCUGGa -3'
miRNA:   3'- gaCGCGGGaUGu--------CUCGcGGGACGACU- -5'
11911 5' -60 NC_003278.1 + 32263 0.66 0.335462
Target:  5'- aUGaCGCCCUGCAGcaagGGCGaCUgUGCgagGAc -3'
miRNA:   3'- gAC-GCGGGAUGUC----UCGC-GGgACGa--CU- -5'
11911 5' -60 NC_003278.1 + 19347 0.66 0.327296
Target:  5'- -cGCGCCUUccgcacccaGCGcGGCGCCCUGgaGc -3'
miRNA:   3'- gaCGCGGGA---------UGUcUCGCGGGACgaCu -5'
11911 5' -60 NC_003278.1 + 115 0.66 0.327296
Target:  5'- cCUGCGaaaCCCUGCAGAGCagguGCUUUuCUGGg -3'
miRNA:   3'- -GACGC---GGGAUGUCUCG----CGGGAcGACU- -5'
11911 5' -60 NC_003278.1 + 15988 0.66 0.319279
Target:  5'- gUGCGCaguugCUGCAGGGCgugGCUgUGCUGc -3'
miRNA:   3'- gACGCGg----GAUGUCUCG---CGGgACGACu -5'
11911 5' -60 NC_003278.1 + 3870 0.66 0.319279
Target:  5'- uUGcCGaCCC-GCGGAcGCGCCCgGUUGAa -3'
miRNA:   3'- gAC-GC-GGGaUGUCU-CGCGGGaCGACU- -5'
11911 5' -60 NC_003278.1 + 8152 0.67 0.288691
Target:  5'- aUGuCGCCCUcGCccGuGUGCCCUgGCUGAc -3'
miRNA:   3'- gAC-GCGGGA-UGu-CuCGCGGGA-CGACU- -5'
11911 5' -60 NC_003278.1 + 31902 0.67 0.274282
Target:  5'- gCU-CGCCCUGCAaaggcgccAGCGgCCUGCUGu -3'
miRNA:   3'- -GAcGCGGGAUGUc-------UCGCgGGACGACu -5'
11911 5' -60 NC_003278.1 + 32166 0.67 0.260454
Target:  5'- uCUG-GCCCagucGCGGaAGCGCuuCCUGCUGGu -3'
miRNA:   3'- -GACgCGGGa---UGUC-UCGCG--GGACGACU- -5'
11911 5' -60 NC_003278.1 + 15921 0.67 0.260454
Target:  5'- uCUGCGCgC-GCAGGucGCGCUCaUGCUGGc -3'
miRNA:   3'- -GACGCGgGaUGUCU--CGCGGG-ACGACU- -5'
11911 5' -60 NC_003278.1 + 34974 0.68 0.22837
Target:  5'- aCUGC-CCCaACAGGGUGCuaccgccguCCUGCUGc -3'
miRNA:   3'- -GACGcGGGaUGUCUCGCG---------GGACGACu -5'
11911 5' -60 NC_003278.1 + 28849 0.69 0.189128
Target:  5'- -gGCGCgCUGCugaucgccgAGAGUgccgccgagaagGCCCUGCUGAu -3'
miRNA:   3'- gaCGCGgGAUG---------UCUCG------------CGGGACGACU- -5'
11911 5' -60 NC_003278.1 + 9387 0.7 0.179058
Target:  5'- uCUGCGCCagguguugUACAGcGcCGCCCUGCUcGGu -3'
miRNA:   3'- -GACGCGGg-------AUGUCuC-GCGGGACGA-CU- -5'
11911 5' -60 NC_003278.1 + 8043 0.74 0.08827
Target:  5'- -gGUGCCCUGCucGGCGCCUgGCUGGc -3'
miRNA:   3'- gaCGCGGGAUGucUCGCGGGaCGACU- -5'
11911 5' -60 NC_003278.1 + 23147 0.76 0.058641
Target:  5'- cCUGCGCcacaCCUACagcgaccgccAGAGCGCCCUGCg-- -3'
miRNA:   3'- -GACGCG----GGAUG----------UCUCGCGGGACGacu -5'
11911 5' -60 NC_003278.1 + 33638 1.08 0.000178
Target:  5'- uCUGCGCCCUACAGAGCGCCCUGCUGAa -3'
miRNA:   3'- -GACGCGGGAUGUCUCGCGGGACGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.