miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11912 3' -54.6 NC_003278.1 + 25471 0.66 0.627306
Target:  5'- cGGCCGAG-UCAgccaCCGCAAcacacgaGACCa -3'
miRNA:   3'- uCCGGCUCaAGUa---GGCGUUcca----CUGG- -5'
11912 3' -54.6 NC_003278.1 + 5006 0.66 0.627306
Target:  5'- -cGCCGAGcaCAgCCGCGaccuGGGUGAgCa -3'
miRNA:   3'- ucCGGCUCaaGUaGGCGU----UCCACUgG- -5'
11912 3' -54.6 NC_003278.1 + 20579 0.66 0.615919
Target:  5'- gAGGgCGAGg----CCGCGAGGgucGCCg -3'
miRNA:   3'- -UCCgGCUCaaguaGGCGUUCCac-UGG- -5'
11912 3' -54.6 NC_003278.1 + 14681 0.66 0.604547
Target:  5'- cGGGCCGAGaaug-CCGgCGAgGGUGAUg -3'
miRNA:   3'- -UCCGGCUCaaguaGGC-GUU-CCACUGg -5'
11912 3' -54.6 NC_003278.1 + 16550 0.67 0.5932
Target:  5'- cGGCCGGGUcCA--UGCc-GGUGGCCu -3'
miRNA:   3'- uCCGGCUCAaGUagGCGuuCCACUGG- -5'
11912 3' -54.6 NC_003278.1 + 30369 0.67 0.581888
Target:  5'- uGGCCGAGU---UCUGgGAGGUcuacGACUa -3'
miRNA:   3'- uCCGGCUCAaguAGGCgUUCCA----CUGG- -5'
11912 3' -54.6 NC_003278.1 + 28796 0.67 0.570622
Target:  5'- cGGCCGAGcgCGUCgCGCAgaucgAGaaaGACCu -3'
miRNA:   3'- uCCGGCUCaaGUAG-GCGU-----UCca-CUGG- -5'
11912 3' -54.6 NC_003278.1 + 30483 0.67 0.559408
Target:  5'- uGGCCGccgacCA-CCGCcagAAGGUGGCCg -3'
miRNA:   3'- uCCGGCucaa-GUaGGCG---UUCCACUGG- -5'
11912 3' -54.6 NC_003278.1 + 33300 0.68 0.526176
Target:  5'- gGGGUCGAgcGUUUAUCUGCAGucgGGCCu -3'
miRNA:   3'- -UCCGGCU--CAAGUAGGCGUUccaCUGG- -5'
11912 3' -54.6 NC_003278.1 + 7317 0.68 0.515261
Target:  5'- cGGGCCGAGgcggCGgguUCCuuGucGGUGGCCg -3'
miRNA:   3'- -UCCGGCUCaa--GU---AGGcgUu-CCACUGG- -5'
11912 3' -54.6 NC_003278.1 + 4390 0.68 0.515261
Target:  5'- cAGGCgGGuGUUUGUCCGCugggccAGGGcGGCCu -3'
miRNA:   3'- -UCCGgCU-CAAGUAGGCG------UUCCaCUGG- -5'
11912 3' -54.6 NC_003278.1 + 5837 0.68 0.504438
Target:  5'- cGGCCGAGcagCuUCCacaGgAAGGUGAUCa -3'
miRNA:   3'- uCCGGCUCaa-GuAGG---CgUUCCACUGG- -5'
11912 3' -54.6 NC_003278.1 + 27653 0.69 0.47259
Target:  5'- cGGCCGucGGaaUGUCCgGCAuGGUGACCu -3'
miRNA:   3'- uCCGGC--UCaaGUAGG-CGUuCCACUGG- -5'
11912 3' -54.6 NC_003278.1 + 33938 0.69 0.4622
Target:  5'- cGGCCugcGGGUcUAUCCGCAgcugauggGGGUGguGCCg -3'
miRNA:   3'- uCCGG---CUCAaGUAGGCGU--------UCCAC--UGG- -5'
11912 3' -54.6 NC_003278.1 + 2819 0.69 0.431776
Target:  5'- cGGCUGGGc-CGUCC-CAGucGGUGACCg -3'
miRNA:   3'- uCCGGCUCaaGUAGGcGUU--CCACUGG- -5'
11912 3' -54.6 NC_003278.1 + 26562 0.69 0.421897
Target:  5'- cGGCC-AGUUgGUCgGC--GGUGACCu -3'
miRNA:   3'- uCCGGcUCAAgUAGgCGuuCCACUGG- -5'
11912 3' -54.6 NC_003278.1 + 1434 0.7 0.402554
Target:  5'- uGGGuCUGGG-UCAUCCGCAuccggaAGaGUGAUCa -3'
miRNA:   3'- -UCC-GGCUCaAGUAGGCGU------UC-CACUGG- -5'
11912 3' -54.6 NC_003278.1 + 10193 0.7 0.374619
Target:  5'- gAGGCCGAcauGcUCGaCCGCAgcaAGGUcGACCu -3'
miRNA:   3'- -UCCGGCU---CaAGUaGGCGU---UCCA-CUGG- -5'
11912 3' -54.6 NC_003278.1 + 20960 0.71 0.365603
Target:  5'- uGGCCGGccuGUUgAUCgGCccgcuGGUGACCg -3'
miRNA:   3'- uCCGGCU---CAAgUAGgCGuu---CCACUGG- -5'
11912 3' -54.6 NC_003278.1 + 16659 0.72 0.29059
Target:  5'- cAGGCCGcgcAGUUCGccagaggagggcuUgCGCAGGGUGAgCg -3'
miRNA:   3'- -UCCGGC---UCAAGU-------------AgGCGUUCCACUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.