miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11912 5' -55.4 NC_003278.1 + 25184 0.66 0.606825
Target:  5'- uUGGcgagCAUCUGCAUCGGCccaUCGACc- -3'
miRNA:   3'- -ACCca--GUGGAUGUAGCCGc--AGCUGug -5'
11912 5' -55.4 NC_003278.1 + 32953 0.66 0.595529
Target:  5'- uUGGGUucgaccaaucCGCCgGCG-CGGUGUCGGC-Ca -3'
miRNA:   3'- -ACCCA----------GUGGaUGUaGCCGCAGCUGuG- -5'
11912 5' -55.4 NC_003278.1 + 17572 0.66 0.561875
Target:  5'- gGGGUCguACCagGCcUgGGCGUCGAUg- -3'
miRNA:   3'- aCCCAG--UGGa-UGuAgCCGCAGCUGug -5'
11912 5' -55.4 NC_003278.1 + 22194 0.67 0.517876
Target:  5'- -uGGUgGCCagguagaGCGUC-GCGUCGACACg -3'
miRNA:   3'- acCCAgUGGa------UGUAGcCGCAGCUGUG- -5'
11912 5' -55.4 NC_003278.1 + 20778 0.68 0.48264
Target:  5'- cGGGUUGCUgccggcggugacgaUGcCAUUGGCGUUGACGg -3'
miRNA:   3'- aCCCAGUGG--------------AU-GUAGCCGCAGCUGUg -5'
11912 5' -55.4 NC_003278.1 + 8338 0.69 0.414966
Target:  5'- aUGGGgagCACCaGCAUUGGcCGcUCGAgGCc -3'
miRNA:   3'- -ACCCa--GUGGaUGUAGCC-GC-AGCUgUG- -5'
11912 5' -55.4 NC_003278.1 + 14136 0.69 0.386608
Target:  5'- cGGccugcUCACCgACAUCGGCG-CGGCAg -3'
miRNA:   3'- aCCc----AGUGGaUGUAGCCGCaGCUGUg -5'
11912 5' -55.4 NC_003278.1 + 2842 0.7 0.367532
Target:  5'- cUGGGUCACCuUGCGgaugaacUCGGCcuguUCGGCGa -3'
miRNA:   3'- -ACCCAGUGG-AUGU-------AGCCGc---AGCUGUg -5'
11912 5' -55.4 NC_003278.1 + 29692 0.7 0.333857
Target:  5'- gGGcGUCGagguUCUuguaGUCGGCGUCGGCGCc -3'
miRNA:   3'- aCC-CAGU----GGAug--UAGCCGCAGCUGUG- -5'
11912 5' -55.4 NC_003278.1 + 13388 0.71 0.301724
Target:  5'- cGGGcCcgcuugacgGCCUACGUCcaucaGCGUCGACGCc -3'
miRNA:   3'- aCCCaG---------UGGAUGUAGc----CGCAGCUGUG- -5'
11912 5' -55.4 NC_003278.1 + 32618 0.71 0.297115
Target:  5'- cGGG-CGCCauCAUCGGCGUCaagucgcccggccaaGGCACg -3'
miRNA:   3'- aCCCaGUGGauGUAGCCGCAG---------------CUGUG- -5'
11912 5' -55.4 NC_003278.1 + 15688 0.71 0.294073
Target:  5'- cUGGGUgGCCgACAUCGuuGCGUCGAacucguagccCACg -3'
miRNA:   3'- -ACCCAgUGGaUGUAGC--CGCAGCU----------GUG- -5'
11912 5' -55.4 NC_003278.1 + 5021 0.72 0.282147
Target:  5'- aGGGUUGCC-GCGUCGGCcaccuucuggcggugGUCGGCGg -3'
miRNA:   3'- aCCCAGUGGaUGUAGCCG---------------CAGCUGUg -5'
11912 5' -55.4 NC_003278.1 + 5172 0.75 0.181259
Target:  5'- -cGGcCACCUcgggcGCGUCGGCGUUGACGg -3'
miRNA:   3'- acCCaGUGGA-----UGUAGCCGCAGCUGUg -5'
11912 5' -55.4 NC_003278.1 + 17409 0.77 0.118359
Target:  5'- cGGGgagCGCUggGCGUCaGGCGUUGACGCg -3'
miRNA:   3'- aCCCa--GUGGa-UGUAG-CCGCAGCUGUG- -5'
11912 5' -55.4 NC_003278.1 + 32711 1.09 0.00061
Target:  5'- cUGGGUCACCUACAUCGGCGUCGACACc -3'
miRNA:   3'- -ACCCAGUGGAUGUAGCCGCAGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.