miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11913 3' -57.7 NC_003278.1 + 25946 0.66 0.433405
Target:  5'- gGUCAggucggccugggccUGGCGCUC-GCGGgaAAGGGCGGc -3'
miRNA:   3'- -CAGU--------------ACUGCGGGaCGUCg-UUCCCGCU- -5'
11913 3' -57.7 NC_003278.1 + 3666 0.66 0.4265
Target:  5'- ----cGGCGCCCgccgGCGGCGc-GGCGGa -3'
miRNA:   3'- caguaCUGCGGGa---CGUCGUucCCGCU- -5'
11913 3' -57.7 NC_003278.1 + 13834 0.66 0.416749
Target:  5'- aUgGUGAUGgCCUGC-GCcGGGGCGc -3'
miRNA:   3'- cAgUACUGCgGGACGuCGuUCCCGCu -5'
11913 3' -57.7 NC_003278.1 + 34051 0.66 0.41385
Target:  5'- ----aGACGCgCCUGCAGCAGGuuaaugagaugaucGGgGAg -3'
miRNA:   3'- caguaCUGCG-GGACGUCGUUC--------------CCgCU- -5'
11913 3' -57.7 NC_003278.1 + 12034 0.66 0.404278
Target:  5'- ----cGACGCCCUGCAucgcaccaccuaccGCGAcGGcGCGGu -3'
miRNA:   3'- caguaCUGCGGGACGU--------------CGUU-CC-CGCU- -5'
11913 3' -57.7 NC_003278.1 + 29810 0.66 0.397662
Target:  5'- --aAUGuucACGUCCUGCAGCAGcGGGUu- -3'
miRNA:   3'- cagUAC---UGCGGGACGUCGUU-CCCGcu -5'
11913 3' -57.7 NC_003278.1 + 19531 0.67 0.379146
Target:  5'- -aCAgccACGCCCUGCAGCAAcuGCGc -3'
miRNA:   3'- caGUac-UGCGGGACGUCGUUccCGCu -5'
11913 3' -57.7 NC_003278.1 + 25337 0.67 0.379146
Target:  5'- uUCGuUGGCGCUgCUGCGGauaccAGGGCGGu -3'
miRNA:   3'- cAGU-ACUGCGG-GACGUCgu---UCCCGCU- -5'
11913 3' -57.7 NC_003278.1 + 6476 0.67 0.361217
Target:  5'- ----cGGCGUgCUGCaggccGGCAAGGGCGc -3'
miRNA:   3'- caguaCUGCGgGACG-----UCGUUCCCGCu -5'
11913 3' -57.7 NC_003278.1 + 13160 0.68 0.31903
Target:  5'- gGUCAgguaGCCCgucacGCgGGCGAGGGCGGc -3'
miRNA:   3'- -CAGUacugCGGGa----CG-UCGUUCCCGCU- -5'
11913 3' -57.7 NC_003278.1 + 32594 0.71 0.203595
Target:  5'- gGUgGUGGCGCCUccgGCGGUAccGGGCGGc -3'
miRNA:   3'- -CAgUACUGCGGGa--CGUCGUu-CCCGCU- -5'
11913 3' -57.7 NC_003278.1 + 26742 0.71 0.187435
Target:  5'- ----cGGCGUUCUGCAGCAGGuGCGAg -3'
miRNA:   3'- caguaCUGCGGGACGUCGUUCcCGCU- -5'
11913 3' -57.7 NC_003278.1 + 29048 0.72 0.16301
Target:  5'- ----cGACaagGCCCUGCAGCAAGccGGCGGc -3'
miRNA:   3'- caguaCUG---CGGGACGUCGUUC--CCGCU- -5'
11913 3' -57.7 NC_003278.1 + 9780 0.78 0.06055
Target:  5'- -cCGUGACGCCCUGCAGCcuGGagucaGCGGc -3'
miRNA:   3'- caGUACUGCGGGACGUCGuuCC-----CGCU- -5'
11913 3' -57.7 NC_003278.1 + 32259 1.08 0.000303
Target:  5'- aGUCAUGACGCCCUGCAGCAAGGGCGAc -3'
miRNA:   3'- -CAGUACUGCGGGACGUCGUUCCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.