miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11913 5' -56.7 NC_003278.1 + 4600 0.66 0.483907
Target:  5'- aGGCaCGCAUCgaacaGCGCUGGGUCGagGCc -3'
miRNA:   3'- -CUG-GCGUAGac---CGCGGUCUAGCagUG- -5'
11913 5' -56.7 NC_003278.1 + 29855 0.66 0.483907
Target:  5'- aGCCGCGgcgCUGGUGCCGuugaagccGAUCaUCAg -3'
miRNA:   3'- cUGGCGUa--GACCGCGGU--------CUAGcAGUg -5'
11913 5' -56.7 NC_003278.1 + 27244 0.66 0.46308
Target:  5'- cGACCuCcUCggaugcGGCGCCAGAggUCGUCGa -3'
miRNA:   3'- -CUGGcGuAGa-----CCGCGGUCU--AGCAGUg -5'
11913 5' -56.7 NC_003278.1 + 28277 0.68 0.384887
Target:  5'- cGGCCGCgAUCUucucaaGGCGCCAGGccCGcagcUCGCg -3'
miRNA:   3'- -CUGGCG-UAGA------CCGCGGUCUa-GC----AGUG- -5'
11913 5' -56.7 NC_003278.1 + 22653 0.68 0.366748
Target:  5'- uGACC-CG-CUGGCGCCAGAgcauuUCGCg -3'
miRNA:   3'- -CUGGcGUaGACCGCGGUCUagc--AGUG- -5'
11913 5' -56.7 NC_003278.1 + 35494 0.68 0.357901
Target:  5'- uGGCCGCAUC-GGCucauucGCCGGcgCG-CGCa -3'
miRNA:   3'- -CUGGCGUAGaCCG------CGGUCuaGCaGUG- -5'
11913 5' -56.7 NC_003278.1 + 8488 0.68 0.349205
Target:  5'- ---aGCAUCUGGCacGCCA--UCGUCGCc -3'
miRNA:   3'- cuggCGUAGACCG--CGGUcuAGCAGUG- -5'
11913 5' -56.7 NC_003278.1 + 5196 0.7 0.270633
Target:  5'- uGACgGCGUcCUGGCGCucCAGGgccaUCGUCAUc -3'
miRNA:   3'- -CUGgCGUA-GACCGCG--GUCU----AGCAGUG- -5'
11913 5' -56.7 NC_003278.1 + 3221 0.71 0.256736
Target:  5'- gGAUgGUgacgAUCUGGCGCCAGAUgCGguccUCGCa -3'
miRNA:   3'- -CUGgCG----UAGACCGCGGUCUA-GC----AGUG- -5'
11913 5' -56.7 NC_003278.1 + 28340 0.71 0.243429
Target:  5'- uGACCGCAacuUCgagGcGCGCUGGAUCGaCGCu -3'
miRNA:   3'- -CUGGCGU---AGa--C-CGCGGUCUAGCaGUG- -5'
11913 5' -56.7 NC_003278.1 + 12864 0.72 0.218538
Target:  5'- uACCGCGaaaugcUCUGGCGCCAGcggGUCAa -3'
miRNA:   3'- cUGGCGU------AGACCGCGGUCuagCAGUg -5'
11913 5' -56.7 NC_003278.1 + 22001 0.72 0.217352
Target:  5'- aGCCGCAUCggugcccagccgGcGCGCCAGuUCGUCGg -3'
miRNA:   3'- cUGGCGUAGa-----------C-CGCGGUCuAGCAGUg -5'
11913 5' -56.7 NC_003278.1 + 20949 0.73 0.185302
Target:  5'- cGAuCCGCAUCUGGCcgGCCuguuGAUCGgccCGCu -3'
miRNA:   3'- -CU-GGCGUAGACCG--CGGu---CUAGCa--GUG- -5'
11913 5' -56.7 NC_003278.1 + 13793 0.73 0.177225
Target:  5'- uGACUGCcgCUGGCGCCGagcugaccgggggacGGUUGUCGa -3'
miRNA:   3'- -CUGGCGuaGACCGCGGU---------------CUAGCAGUg -5'
11913 5' -56.7 NC_003278.1 + 15909 0.74 0.161093
Target:  5'- uGGCCGCcuggAUCUGcGCGCgCAGGUCG-CGCu -3'
miRNA:   3'- -CUGGCG----UAGAC-CGCG-GUCUAGCaGUG- -5'
11913 5' -56.7 NC_003278.1 + 32294 1.08 0.00043
Target:  5'- gGACCGCAUCUGGCGCCAGAUCGUCACc -3'
miRNA:   3'- -CUGGCGUAGACCGCGGUCUAGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.