Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11914 | 3' | -61.1 | NC_003278.1 | + | 13852 | 0.67 | 0.227223 |
Target: 5'- -gGGGCGCU-GGCGCcGAgcaCCAGgGCa -3' miRNA: 3'- aaCUCGCGGuCCGCGcCUa--GGUCgCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 16171 | 0.73 | 0.0787 |
Target: 5'- -aGGGCGCCgcgcuGGGUGCGGAa--GGCGCg -3' miRNA: 3'- aaCUCGCGG-----UCCGCGCCUaggUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 16075 | 0.75 | 0.058832 |
Target: 5'- gUGAGCGCgCGGGUGgGGuugCCGGCGg -3' miRNA: 3'- aACUCGCG-GUCCGCgCCua-GGUCGCg -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 31588 | 1.08 | 0.000142 |
Target: 5'- cUUGAGCGCCAGGCGCGGAUCCAGCGCu -3' miRNA: 3'- -AACUCGCGGUCCGCGCCUAGGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 16132 | 0.66 | 0.272639 |
Target: 5'- ---cGUGCCuguuGCGCGG--CCAGCGCg -3' miRNA: 3'- aacuCGCGGuc--CGCGCCuaGGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 15895 | 0.66 | 0.272639 |
Target: 5'- gUUGAugGCGCCAuuGGcCGCcuGGAUCUGcGCGCg -3' miRNA: 3'- -AACU--CGCGGU--CC-GCG--CCUAGGU-CGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 3462 | 0.66 | 0.272639 |
Target: 5'- --aGGUGCCGGcCGCGGcucgCCAGaCGCg -3' miRNA: 3'- aacUCGCGGUCcGCGCCua--GGUC-GCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 24826 | 0.66 | 0.26573 |
Target: 5'- cUGGGCGUCGcccuuGGCGCGcagaUAGCGCa -3' miRNA: 3'- aACUCGCGGU-----CCGCGCcuagGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 15223 | 0.66 | 0.261653 |
Target: 5'- -aGAGCGCaucgAGGUGCcggccaugcugcccuGGAcgCCAGCGUu -3' miRNA: 3'- aaCUCGCGg---UCCGCG---------------CCUa-GGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 21285 | 0.71 | 0.124349 |
Target: 5'- aUGGGgucagccgucuCGCCGGGCGCGccgCCGGCGUc -3' miRNA: 3'- aACUC-----------GCGGUCCGCGCcuaGGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 13663 | 0.69 | 0.173595 |
Target: 5'- -cGGGCGCgCAGGCGCGccgCCuuguuGCGUu -3' miRNA: 3'- aaCUCGCG-GUCCGCGCcuaGGu----CGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 2742 | 0.69 | 0.178404 |
Target: 5'- uUUGgcAGgGCCAcgguGGCGCGGGUCC-GCGa -3' miRNA: 3'- -AAC--UCgCGGU----CCGCGCCUAGGuCGCg -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 2453 | 0.67 | 0.227223 |
Target: 5'- ---uGUGCCAGGUGCc-AUCCAGCGa -3' miRNA: 3'- aacuCGCGGUCCGCGccUAGGUCGCg -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 29896 | 0.69 | 0.159856 |
Target: 5'- -cGAGgGCCuGGCGCuugaGGAUCgCGucGCGCa -3' miRNA: 3'- aaCUCgCGGuCCGCG----CCUAG-GU--CGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 21470 | 0.68 | 0.209803 |
Target: 5'- -cGAucGuCGCCAGGCcgugGCGGGccaggaugUCCGGCGUg -3' miRNA: 3'- aaCU--C-GCGGUCCG----CGCCU--------AGGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 26480 | 0.68 | 0.188378 |
Target: 5'- -cGAGCguucGCCAGGCGCuGGUgcUCGGCGg -3' miRNA: 3'- aaCUCG----CGGUCCGCGcCUA--GGUCGCg -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 2917 | 0.7 | 0.135287 |
Target: 5'- aUGAugGCGCCcgAGGUGUcGGUCCAGCGg -3' miRNA: 3'- aACU--CGCGG--UCCGCGcCUAGGUCGCg -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 12839 | 0.74 | 0.066118 |
Target: 5'- cUGAGCG---GGCGCGGAugcugagcacgUCCGGCGCg -3' miRNA: 3'- aACUCGCgguCCGCGCCU-----------AGGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 25628 | 0.68 | 0.20646 |
Target: 5'- aUGGGUaGCCccuuGGGUGCGGAugaucaugucgaccuUCgCGGCGCa -3' miRNA: 3'- aACUCG-CGG----UCCGCGCCU---------------AG-GUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 17418 | 0.68 | 0.204257 |
Target: 5'- cUGGGCGUCAGGCGuuGAcgcggCUGGCGa -3' miRNA: 3'- aACUCGCGGUCCGCgcCUa----GGUCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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