miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11914 3' -61.1 NC_003278.1 + 16171 0.73 0.0787
Target:  5'- -aGGGCGCCgcgcuGGGUGCGGAa--GGCGCg -3'
miRNA:   3'- aaCUCGCGG-----UCCGCGCCUaggUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 12839 0.74 0.066118
Target:  5'- cUGAGCG---GGCGCGGAugcugagcacgUCCGGCGCg -3'
miRNA:   3'- aACUCGCgguCCGCGCCU-----------AGGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 16075 0.75 0.058832
Target:  5'- gUGAGCGCgCGGGUGgGGuugCCGGCGg -3'
miRNA:   3'- aACUCGCG-GUCCGCgCCua-GGUCGCg -5'
11914 3' -61.1 NC_003278.1 + 4382 0.76 0.049196
Target:  5'- cUGGGCGCCAGGCGgguguuuguccgcUGGG-CCAGgGCg -3'
miRNA:   3'- aACUCGCGGUCCGC-------------GCCUaGGUCgCG- -5'
11914 3' -61.1 NC_003278.1 + 6885 0.78 0.033614
Target:  5'- gUGGGCGCCGGGUuCGuuGUCCAGCGCc -3'
miRNA:   3'- aACUCGCGGUCCGcGCc-UAGGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 26480 0.68 0.188378
Target:  5'- -cGAGCguucGCCAGGCGCuGGUgcUCGGCGg -3'
miRNA:   3'- aaCUCG----CGGUCCGCGcCUA--GGUCGCg -5'
11914 3' -61.1 NC_003278.1 + 17418 0.68 0.204257
Target:  5'- cUGGGCGUCAGGCGuuGAcgcggCUGGCGa -3'
miRNA:   3'- aACUCGCGGUCCGCgcCUa----GGUCGCg -5'
11914 3' -61.1 NC_003278.1 + 16132 0.66 0.272639
Target:  5'- ---cGUGCCuguuGCGCGG--CCAGCGCg -3'
miRNA:   3'- aacuCGCGGuc--CGCGCCuaGGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 15895 0.66 0.272639
Target:  5'- gUUGAugGCGCCAuuGGcCGCcuGGAUCUGcGCGCg -3'
miRNA:   3'- -AACU--CGCGGU--CC-GCG--CCUAGGU-CGCG- -5'
11914 3' -61.1 NC_003278.1 + 3462 0.66 0.272639
Target:  5'- --aGGUGCCGGcCGCGGcucgCCAGaCGCg -3'
miRNA:   3'- aacUCGCGGUCcGCGCCua--GGUC-GCG- -5'
11914 3' -61.1 NC_003278.1 + 24826 0.66 0.26573
Target:  5'- cUGGGCGUCGcccuuGGCGCGcagaUAGCGCa -3'
miRNA:   3'- aACUCGCGGU-----CCGCGCcuagGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 15223 0.66 0.261653
Target:  5'- -aGAGCGCaucgAGGUGCcggccaugcugcccuGGAcgCCAGCGUu -3'
miRNA:   3'- aaCUCGCGg---UCCGCG---------------CCUa-GGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 26526 0.67 0.233296
Target:  5'- ---cGC-CCGGGCGaGGGUucaCCAGCGCg -3'
miRNA:   3'- aacuCGcGGUCCGCgCCUA---GGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 13852 0.67 0.227223
Target:  5'- -gGGGCGCU-GGCGCcGAgcaCCAGgGCa -3'
miRNA:   3'- aaCUCGCGGuCCGCGcCUa--GGUCgCG- -5'
11914 3' -61.1 NC_003278.1 + 2453 0.67 0.227223
Target:  5'- ---uGUGCCAGGUGCc-AUCCAGCGa -3'
miRNA:   3'- aacuCGCGGUCCGCGccUAGGUCGCg -5'
11914 3' -61.1 NC_003278.1 + 21470 0.68 0.209803
Target:  5'- -cGAucGuCGCCAGGCcgugGCGGGccaggaugUCCGGCGUg -3'
miRNA:   3'- aaCU--C-GCGGUCCG----CGCCU--------AGGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 25628 0.68 0.20646
Target:  5'- aUGGGUaGCCccuuGGGUGCGGAugaucaugucgaccuUCgCGGCGCa -3'
miRNA:   3'- aACUCG-CGG----UCCGCGCCU---------------AG-GUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 31588 1.08 0.000142
Target:  5'- cUUGAGCGCCAGGCGCGGAUCCAGCGCu -3'
miRNA:   3'- -AACUCGCGGUCCGCGCCUAGGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.