miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11914 5' -54.6 NC_003278.1 + 29891 0.66 0.646558
Target:  5'- cGcGUugGGcguGACCGGCCaGAagACCgCCGg -3'
miRNA:   3'- aC-CAugCCu--UUGGCUGGaCU--UGG-GGC- -5'
11914 5' -54.6 NC_003278.1 + 14049 0.66 0.623939
Target:  5'- ---aGCGG--GCCGGCCUGGccggcgccgagGCCCUGg -3'
miRNA:   3'- accaUGCCuuUGGCUGGACU-----------UGGGGC- -5'
11914 5' -54.6 NC_003278.1 + 19173 0.67 0.612635
Target:  5'- gGGUACGGAGuuccGCCGAuggcgaaugaCCUGcAGCUgCGc -3'
miRNA:   3'- aCCAUGCCUU----UGGCU----------GGAC-UUGGgGC- -5'
11914 5' -54.6 NC_003278.1 + 16021 0.67 0.612635
Target:  5'- aGGUGCugcugcuugaGGAAACCGGCUUcacGGAUggCCCGg -3'
miRNA:   3'- aCCAUG----------CCUUUGGCUGGA---CUUG--GGGC- -5'
11914 5' -54.6 NC_003278.1 + 30701 0.67 0.60135
Target:  5'- gGGUGuCGGGAuuggucuugcgGCUGGCgaGggUCCCGu -3'
miRNA:   3'- aCCAU-GCCUU-----------UGGCUGgaCuuGGGGC- -5'
11914 5' -54.6 NC_003278.1 + 26608 0.67 0.578872
Target:  5'- cGG-ACGcGAAugCGccgccgcccGCCUGGGCCUCGa -3'
miRNA:   3'- aCCaUGC-CUUugGC---------UGGACUUGGGGC- -5'
11914 5' -54.6 NC_003278.1 + 14454 0.67 0.567699
Target:  5'- aGGUACGcGgcGCCGGCCaGcACCgCCa -3'
miRNA:   3'- aCCAUGC-CuuUGGCUGGaCuUGG-GGc -5'
11914 5' -54.6 NC_003278.1 + 7805 0.67 0.553256
Target:  5'- cGGUccucgaggcgaaccACGGccuGGCCGACCacGGCCCCa -3'
miRNA:   3'- aCCA--------------UGCCu--UUGGCUGGacUUGGGGc -5'
11914 5' -54.6 NC_003278.1 + 18742 0.68 0.523638
Target:  5'- cGGUguucugcgaGCGGAAACUcACC-GGACUCCGg -3'
miRNA:   3'- aCCA---------UGCCUUUGGcUGGaCUUGGGGC- -5'
11914 5' -54.6 NC_003278.1 + 3811 0.68 0.502095
Target:  5'- ---cGCGGAGGCCGGCC-GggUCCaCGu -3'
miRNA:   3'- accaUGCCUUUGGCUGGaCuuGGG-GC- -5'
11914 5' -54.6 NC_003278.1 + 14391 0.7 0.430106
Target:  5'- cUGGaUACgGGAGAUCGGCCUcgaGGACgCCGa -3'
miRNA:   3'- -ACC-AUG-CCUUUGGCUGGA---CUUGgGGC- -5'
11914 5' -54.6 NC_003278.1 + 18136 0.7 0.410669
Target:  5'- cGG-ACgGGGAGCCGACCcaccUGAuUCCCGg -3'
miRNA:   3'- aCCaUG-CCUUUGGCUGG----ACUuGGGGC- -5'
11914 5' -54.6 NC_003278.1 + 21436 0.7 0.401157
Target:  5'- cUGG-GCGGGuucaccauGGCCGGCCUGGcccaggGCCUCGg -3'
miRNA:   3'- -ACCaUGCCU--------UUGGCUGGACU------UGGGGC- -5'
11914 5' -54.6 NC_003278.1 + 31625 1.1 0.00069
Target:  5'- gUGGUACGGAAACCGACCUGAACCCCGa -3'
miRNA:   3'- -ACCAUGCCUUUGGCUGGACUUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.