miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11915 5' -50.4 NC_003278.1 + 4851 0.66 0.875998
Target:  5'- cAGCGCUGCCGaaGAGGgcaCCC-UCg -3'
miRNA:   3'- cUUGCGACGGCagCUUUaa-GGGuAGg -5'
11915 5' -50.4 NC_003278.1 + 15431 0.66 0.867618
Target:  5'- uGAACGCuUGCCGUUGGug-UCgCAgggacuggCCa -3'
miRNA:   3'- -CUUGCG-ACGGCAGCUuuaAGgGUa-------GG- -5'
11915 5' -50.4 NC_003278.1 + 25342 0.66 0.85896
Target:  5'- uGGCGCUGCUG-CGGAuaccagggcgGUaCCgGUCCa -3'
miRNA:   3'- cUUGCGACGGCaGCUU----------UAaGGgUAGG- -5'
11915 5' -50.4 NC_003278.1 + 22325 0.66 0.85896
Target:  5'- gGGGCGCUGCCGUUG-----CCCugggcggCCu -3'
miRNA:   3'- -CUUGCGACGGCAGCuuuaaGGGua-----GG- -5'
11915 5' -50.4 NC_003278.1 + 30926 0.67 0.831415
Target:  5'- cAGCGCUGU--UCGAGcgUgCCUGUCCg -3'
miRNA:   3'- cUUGCGACGgcAGCUUuaA-GGGUAGG- -5'
11915 5' -50.4 NC_003278.1 + 24942 0.67 0.820765
Target:  5'- aGGCGCUG-CGUCGggGUugcgcugUgCCAUCa -3'
miRNA:   3'- cUUGCGACgGCAGCuuUA-------AgGGUAGg -5'
11915 5' -50.4 NC_003278.1 + 32198 0.68 0.780931
Target:  5'- uGGCGCgGCaCGUCGAGAaagugccgCCCuUCCu -3'
miRNA:   3'- cUUGCGaCG-GCAGCUUUaa------GGGuAGG- -5'
11915 5' -50.4 NC_003278.1 + 21457 0.68 0.759424
Target:  5'- aGggUGUcGCCGUCGAucgUCgCCAggCCg -3'
miRNA:   3'- -CuuGCGaCGGCAGCUuuaAG-GGUa-GG- -5'
11915 5' -50.4 NC_003278.1 + 20523 0.7 0.656931
Target:  5'- -uGCGC-GCCGUCGAGGgcggCCaguUCCa -3'
miRNA:   3'- cuUGCGaCGGCAGCUUUaa--GGgu-AGG- -5'
11915 5' -50.4 NC_003278.1 + 1965 0.7 0.645237
Target:  5'- -cACGCUGCCcuucUCGAAuucgugCUCAUCCu -3'
miRNA:   3'- cuUGCGACGGc---AGCUUuaa---GGGUAGG- -5'
11915 5' -50.4 NC_003278.1 + 4061 0.75 0.373503
Target:  5'- -uACGCUGUCGgccCGG---UCCCAUCCg -3'
miRNA:   3'- cuUGCGACGGCa--GCUuuaAGGGUAGG- -5'
11915 5' -50.4 NC_003278.1 + 866 0.75 0.355171
Target:  5'- uAAUGCUugaagaucaucGCCGUCGAGGUgugcCCCAUCUg -3'
miRNA:   3'- cUUGCGA-----------CGGCAGCUUUAa---GGGUAGG- -5'
11915 5' -50.4 NC_003278.1 + 31322 1.13 0.000972
Target:  5'- uGAACGCUGCCGUCGAAAUUCCCAUCCg -3'
miRNA:   3'- -CUUGCGACGGCAGCUUUAAGGGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.