miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11916 5' -55.1 NC_003278.1 + 32543 0.66 0.619805
Target:  5'- ----cUGUCGcGGACCcGCgcgCGcCGGCa -3'
miRNA:   3'- caugaACAGCaCCUGGuCGa--GC-GCCG- -5'
11916 5' -55.1 NC_003278.1 + 8730 0.66 0.608443
Target:  5'- -aGgUUGUCGaguUGGGuuGGCUCG-GGCa -3'
miRNA:   3'- caUgAACAGC---ACCUggUCGAGCgCCG- -5'
11916 5' -55.1 NC_003278.1 + 28051 0.66 0.585794
Target:  5'- -cGCUUgagaaaGUCGcGGAucgcCCAGCgcuggUCGCGGCg -3'
miRNA:   3'- caUGAA------CAGCaCCU----GGUCG-----AGCGCCG- -5'
11916 5' -55.1 NC_003278.1 + 32768 0.67 0.552153
Target:  5'- uUGC-UGUCGcGGACCcGCgccacCGUGGCc -3'
miRNA:   3'- cAUGaACAGCaCCUGGuCGa----GCGCCG- -5'
11916 5' -55.1 NC_003278.1 + 30703 0.67 0.541063
Target:  5'- ----gUGUCG-GGAUUGGuCUUGCGGCu -3'
miRNA:   3'- caugaACAGCaCCUGGUC-GAGCGCCG- -5'
11916 5' -55.1 NC_003278.1 + 4793 0.67 0.530048
Target:  5'- -----aGUCGUGGAUCAGUugcagauagUCGUGGg -3'
miRNA:   3'- caugaaCAGCACCUGGUCG---------AGCGCCg -5'
11916 5' -55.1 NC_003278.1 + 25939 0.68 0.486891
Target:  5'- -cGCUguuggucagGUCGgccUGGGCCuggcGCUCGCGGg -3'
miRNA:   3'- caUGAa--------CAGC---ACCUGGu---CGAGCGCCg -5'
11916 5' -55.1 NC_003278.1 + 8579 0.68 0.445468
Target:  5'- -gGCaUGUCGUGcGGCCAgguGUUgGCGGUg -3'
miRNA:   3'- caUGaACAGCAC-CUGGU---CGAgCGCCG- -5'
11916 5' -55.1 NC_003278.1 + 31521 0.69 0.409928
Target:  5'- -gGC-UGUCGagUGGGCCAGCUacauggccaaccugGCGGCc -3'
miRNA:   3'- caUGaACAGC--ACCUGGUCGAg-------------CGCCG- -5'
11916 5' -55.1 NC_003278.1 + 18825 0.71 0.33341
Target:  5'- aGUGCUgagcGUCGUGGuACCaaccucgAGCucgUCGCGGUg -3'
miRNA:   3'- -CAUGAa---CAGCACC-UGG-------UCG---AGCGCCG- -5'
11916 5' -55.1 NC_003278.1 + 14145 0.71 0.309812
Target:  5'- -aGCUUGUCcuUGaACCAGUcgaUCGCGGCg -3'
miRNA:   3'- caUGAACAGc-ACcUGGUCG---AGCGCCG- -5'
11916 5' -55.1 NC_003278.1 + 29593 1.11 0.000438
Target:  5'- aGUACUUGUCGUGGACCAGCUCGCGGCc -3'
miRNA:   3'- -CAUGAACAGCACCUGGUCGAGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.