miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11918 3' -53.7 NC_003278.1 + 29500 0.67 0.592419
Target:  5'- cCACCgGCGGCA--GGCCGCccaugcGCUUCu- -3'
miRNA:   3'- -GUGG-CGCCGUuaCUGGCGu-----UGAAGcu -5'
11918 3' -53.7 NC_003278.1 + 18286 0.67 0.581012
Target:  5'- aCGCCGC--CGAUGACCGCGcuauuggucgcgGCUUCa- -3'
miRNA:   3'- -GUGGCGccGUUACUGGCGU------------UGAAGcu -5'
11918 3' -53.7 NC_003278.1 + 22224 0.68 0.547107
Target:  5'- uCGCCGaCGGCAcc--CCGCGGCggaUCGAg -3'
miRNA:   3'- -GUGGC-GCCGUuacuGGCGUUGa--AGCU- -5'
11918 3' -53.7 NC_003278.1 + 5726 0.68 0.53594
Target:  5'- uCGCUGCGGuCGgccucgagcAUGACCauugGCAugUUCGAc -3'
miRNA:   3'- -GUGGCGCC-GU---------UACUGG----CGUugAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 2979 0.68 0.524853
Target:  5'- uGCCgGCGcGCGcgGGCCGCGACagaGAa -3'
miRNA:   3'- gUGG-CGC-CGUuaCUGGCGUUGaagCU- -5'
11918 3' -53.7 NC_003278.1 + 4412 0.69 0.502951
Target:  5'- uCGCCGUcgaaggGGCGAccacggacGGCCGCAACaUCGAg -3'
miRNA:   3'- -GUGGCG------CCGUUa-------CUGGCGUUGaAGCU- -5'
11918 3' -53.7 NC_003278.1 + 17764 0.69 0.502951
Target:  5'- gCACCuGCaGCGAUGAuCCGCuguucgcCUUCGAg -3'
miRNA:   3'- -GUGG-CGcCGUUACU-GGCGuu-----GAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 15277 0.69 0.502951
Target:  5'- gGCCGUGGCGgugGUGACCGUcuccaGGCUcUGGc -3'
miRNA:   3'- gUGGCGCCGU---UACUGGCG-----UUGAaGCU- -5'
11918 3' -53.7 NC_003278.1 + 7784 0.69 0.481457
Target:  5'- gCACCGcCGGC-GUGACCGaGGCgguccUCGAg -3'
miRNA:   3'- -GUGGC-GCCGuUACUGGCgUUGa----AGCU- -5'
11918 3' -53.7 NC_003278.1 + 29759 0.7 0.460418
Target:  5'- gCGCCGCuGGC--UGACC-CAGCUgUCGAa -3'
miRNA:   3'- -GUGGCG-CCGuuACUGGcGUUGA-AGCU- -5'
11918 3' -53.7 NC_003278.1 + 10435 0.7 0.460418
Target:  5'- gCGCC-CGGcCAAUGGCUGaCAGCcUCGAg -3'
miRNA:   3'- -GUGGcGCC-GUUACUGGC-GUUGaAGCU- -5'
11918 3' -53.7 NC_003278.1 + 23258 0.7 0.439876
Target:  5'- cCGCCGUGGguAUGACCGaccaGGCUgaugcccuuggCGAu -3'
miRNA:   3'- -GUGGCGCCguUACUGGCg---UUGAa----------GCU- -5'
11918 3' -53.7 NC_003278.1 + 31718 0.7 0.419867
Target:  5'- gACC-CGGCcggccuCCGCGACUUCGAg -3'
miRNA:   3'- gUGGcGCCGuuacu-GGCGUUGAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 23721 0.71 0.372347
Target:  5'- cCACCGCGGCGAUGguGCCGaGGCggaucagguucUCGAu -3'
miRNA:   3'- -GUGGCGCCGUUAC--UGGCgUUGa----------AGCU- -5'
11918 3' -53.7 NC_003278.1 + 19185 0.71 0.363292
Target:  5'- cCGCCGaUGGCgAAUGACCuGCAGCUgcgCGu -3'
miRNA:   3'- -GUGGC-GCCG-UUACUGG-CGUUGAa--GCu -5'
11918 3' -53.7 NC_003278.1 + 28214 0.72 0.320344
Target:  5'- cCGCCGCcucggcccgGGCGuaccuggcccAUGcCCGCGGCUUCGAc -3'
miRNA:   3'- -GUGGCG---------CCGU----------UACuGGCGUUGAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 2436 0.72 0.312225
Target:  5'- uGCUgGCGGCGGUGGCUGCGACgUUUGc -3'
miRNA:   3'- gUGG-CGCCGUUACUGGCGUUG-AAGCu -5'
11918 3' -53.7 NC_003278.1 + 10628 0.73 0.288808
Target:  5'- aCugCGCGGCAAgcagGGCCGUA--UUCGGc -3'
miRNA:   3'- -GugGCGCCGUUa---CUGGCGUugAAGCU- -5'
11918 3' -53.7 NC_003278.1 + 14153 0.74 0.239576
Target:  5'- uCGgCGCGGCAGcgcUGAUCGCGGCgagCGAg -3'
miRNA:   3'- -GUgGCGCCGUU---ACUGGCGUUGaa-GCU- -5'
11918 3' -53.7 NC_003278.1 + 22824 0.76 0.176541
Target:  5'- cCACCGCGuGUggUGGCgGCAACUggcugaggUCGAu -3'
miRNA:   3'- -GUGGCGC-CGuuACUGgCGUUGA--------AGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.