miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11918 5' -55 NC_003278.1 + 14260 0.65 0.643514
Target:  5'- aGUCGcugaagcGCGCcGGcaGGUCGAUGCcCAGGu -3'
miRNA:   3'- cUAGC-------UGCGaCC--UCAGCUACGcGUCC- -5'
11918 5' -55 NC_003278.1 + 18355 0.66 0.633328
Target:  5'- --gCGGCGUUGGccuGGUCGGcgauUGCuuGCAGGc -3'
miRNA:   3'- cuaGCUGCGACC---UCAGCU----ACG--CGUCC- -5'
11918 5' -55 NC_003278.1 + 13559 0.66 0.62201
Target:  5'- --cUGACGCUGGGGgaugagUGAUGCcCAGc -3'
miRNA:   3'- cuaGCUGCGACCUCa-----GCUACGcGUCc -5'
11918 5' -55 NC_003278.1 + 22403 0.66 0.62201
Target:  5'- --cCGACGCgaccGUCGGcgGCGCGGGc -3'
miRNA:   3'- cuaGCUGCGaccuCAGCUa-CGCGUCC- -5'
11918 5' -55 NC_003278.1 + 32971 0.66 0.610701
Target:  5'- --cCGGCGC-GGuGUCGGccagUGCGCGGc -3'
miRNA:   3'- cuaGCUGCGaCCuCAGCU----ACGCGUCc -5'
11918 5' -55 NC_003278.1 + 21484 0.66 0.610701
Target:  5'- --cCGugGCgggccaGGAuGUCcggcguGAUGCGCAGGu -3'
miRNA:   3'- cuaGCugCGa-----CCU-CAG------CUACGCGUCC- -5'
11918 5' -55 NC_003278.1 + 7914 0.66 0.610701
Target:  5'- ---gGGCGCUGuuuGAG-CaGGUGCGCGGGc -3'
miRNA:   3'- cuagCUGCGAC---CUCaG-CUACGCGUCC- -5'
11918 5' -55 NC_003278.1 + 21373 0.66 0.609571
Target:  5'- cGAUCaGCGCUGccgcgccGAuGUCGGUGaGCAGGc -3'
miRNA:   3'- -CUAGcUGCGAC-------CU-CAGCUACgCGUCC- -5'
11918 5' -55 NC_003278.1 + 6062 0.66 0.588152
Target:  5'- uGAUCGAgCGCUGcaGGGUCuucagGCGCAGc -3'
miRNA:   3'- -CUAGCU-GCGAC--CUCAGcua--CGCGUCc -5'
11918 5' -55 NC_003278.1 + 9069 0.67 0.532614
Target:  5'- aGAUCGACGauaccgccgccCUGGAGUCGGccaguugggGCGCcuuccagaucauGGGg -3'
miRNA:   3'- -CUAGCUGC-----------GACCUCAGCUa--------CGCG------------UCC- -5'
11918 5' -55 NC_003278.1 + 12345 0.68 0.510907
Target:  5'- -cUCGGCGC-GG-G-CGgcGCGCAGGg -3'
miRNA:   3'- cuAGCUGCGaCCuCaGCuaCGCGUCC- -5'
11918 5' -55 NC_003278.1 + 20524 0.68 0.489578
Target:  5'- --gUGACGCcGGAGUUGGccaGCGuCAGGa -3'
miRNA:   3'- cuaGCUGCGaCCUCAGCUa--CGC-GUCC- -5'
11918 5' -55 NC_003278.1 + 21068 0.69 0.438204
Target:  5'- -cUCGACGCUGGccUUGAagcUGgGCGGGc -3'
miRNA:   3'- cuAGCUGCGACCucAGCU---ACgCGUCC- -5'
11918 5' -55 NC_003278.1 + 31856 0.69 0.428302
Target:  5'- uGAUCGacGCGCUGGAaaCGggGCGCAa- -3'
miRNA:   3'- -CUAGC--UGCGACCUcaGCuaCGCGUcc -5'
11918 5' -55 NC_003278.1 + 5762 0.7 0.380851
Target:  5'- -uUCGACaGCUGG-GUCagccaGcgGCGCAGGc -3'
miRNA:   3'- cuAGCUG-CGACCuCAG-----CuaCGCGUCC- -5'
11918 5' -55 NC_003278.1 + 30010 0.7 0.380851
Target:  5'- -cUCGuaACGCUGGuuGUCGA-GCGCGGa -3'
miRNA:   3'- cuAGC--UGCGACCu-CAGCUaCGCGUCc -5'
11918 5' -55 NC_003278.1 + 4607 0.71 0.345505
Target:  5'- cAUCGaacaGCGCUGG-GUCGAggccGCGCAGc -3'
miRNA:   3'- cUAGC----UGCGACCuCAGCUa---CGCGUCc -5'
11918 5' -55 NC_003278.1 + 7077 0.74 0.204736
Target:  5'- aGGUCGACGCUGGgugggcaccaccAGaCGccGCGCGGGc -3'
miRNA:   3'- -CUAGCUGCGACC------------UCaGCuaCGCGUCC- -5'
11918 5' -55 NC_003278.1 + 28363 1.1 0.000585
Target:  5'- gGAUCGACGCUGGAGUCGAUGCGCAGGu -3'
miRNA:   3'- -CUAGCUGCGACCUCAGCUACGCGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.