Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11919 | 3' | -55.2 | NC_003278.1 | + | 8777 | 1.13 | 0.000333 |
Target: 5'- gCGAUGCCAUCGGCGACCAGUCCAUGCg -3' miRNA: 3'- -GCUACGGUAGCCGCUGGUCAGGUACG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 20527 | 0.77 | 0.129851 |
Target: 5'- ---cGCCGUCgagGGCGGCCAGUuccagaCCAUGCg -3' miRNA: 3'- gcuaCGGUAG---CCGCUGGUCA------GGUACG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 3299 | 0.76 | 0.149764 |
Target: 5'- uGAUGCgAUCGGCGGCCGG-CU-UGCc -3' miRNA: 3'- gCUACGgUAGCCGCUGGUCaGGuACG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 22273 | 0.76 | 0.16301 |
Target: 5'- gGGUGCCGUCGGCGAagaagaguguCCGcGUCUcgGUg -3' miRNA: 3'- gCUACGGUAGCCGCU----------GGU-CAGGuaCG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 23475 | 0.75 | 0.1773 |
Target: 5'- cCGGUGUCGUCGGCcaggucgcuGACCAgGUCCucggGCa -3' miRNA: 3'- -GCUACGGUAGCCG---------CUGGU-CAGGua--CG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 14419 | 0.74 | 0.209244 |
Target: 5'- cCGAUgGCCAUCGGCaGuACCAG-CUcgGCg -3' miRNA: 3'- -GCUA-CGGUAGCCG-C-UGGUCaGGuaCG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 22679 | 0.73 | 0.227007 |
Target: 5'- aGGUGCCcUUGuCGACCAGUCCGcUGUc -3' miRNA: 3'- gCUACGGuAGCcGCUGGUCAGGU-ACG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 14602 | 0.73 | 0.239547 |
Target: 5'- aCGAUGCCGUCGucgaUGAUCAGuucgacgugcUCCAUGCc -3' miRNA: 3'- -GCUACGGUAGCc---GCUGGUC----------AGGUACG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 16886 | 0.72 | 0.265659 |
Target: 5'- aGAcGCCAUCuGCGaagagggcuucgaGCCAGUCCgGUGCg -3' miRNA: 3'- gCUaCGGUAGcCGC-------------UGGUCAGG-UACG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 22008 | 0.71 | 0.303222 |
Target: 5'- uCGGUGCCcagcCGGCGcGCCAGUUCGUcggucGCg -3' miRNA: 3'- -GCUACGGua--GCCGC-UGGUCAGGUA-----CG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 29641 | 0.71 | 0.303222 |
Target: 5'- uCGAgGCCAcCGGCGagGCCGGUgCcgGCa -3' miRNA: 3'- -GCUaCGGUaGCCGC--UGGUCAgGuaCG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 5210 | 0.71 | 0.311049 |
Target: 5'- ---cGCCAcCGGUGACCGGgggCCGcUGCu -3' miRNA: 3'- gcuaCGGUaGCCGCUGGUCa--GGU-ACG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 12298 | 0.71 | 0.31903 |
Target: 5'- uGAUGCCcUUGGCGAUCAcGUCgAcGCu -3' miRNA: 3'- gCUACGGuAGCCGCUGGU-CAGgUaCG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 14784 | 0.71 | 0.31903 |
Target: 5'- aCGAUGCCAUUGGCGuugacggugaccGCaCGGUagGUGCc -3' miRNA: 3'- -GCUACGGUAGCCGC------------UG-GUCAggUACG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 32769 | 0.71 | 0.330459 |
Target: 5'- aCGGUGCCggcugggccgucccaGUCGGUGACCGGguaCuUGCc -3' miRNA: 3'- -GCUACGG---------------UAGCCGCUGGUCag-GuACG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 33122 | 0.7 | 0.370107 |
Target: 5'- aGGUGCCAUCcaGCGACUGGaUgAUGCa -3' miRNA: 3'- gCUACGGUAGc-CGCUGGUCaGgUACG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 32259 | 0.7 | 0.370107 |
Target: 5'- ---cGCCGUCGGCGACauccuCGGcCgCAUGCc -3' miRNA: 3'- gcuaCGGUAGCCGCUG-----GUCaG-GUACG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 27560 | 0.7 | 0.378236 |
Target: 5'- uCGAUGCCcagccagAUCGGCu-CUGGUCCA-GCg -3' miRNA: 3'- -GCUACGG-------UAGCCGcuGGUCAGGUaCG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 21665 | 0.69 | 0.416749 |
Target: 5'- uCGGUGCCcuggugcUCGGCG-CCAGcgcCCcgGCg -3' miRNA: 3'- -GCUACGGu------AGCCGCuGGUCa--GGuaCG- -5' |
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11919 | 3' | -55.2 | NC_003278.1 | + | 17242 | 0.69 | 0.4265 |
Target: 5'- gCGcgGUCAUCGGCGGCguCAGcgCCGaugGCa -3' miRNA: 3'- -GCuaCGGUAGCCGCUG--GUCa-GGUa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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