miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11919 3' -55.2 NC_003278.1 + 14784 0.71 0.31903
Target:  5'- aCGAUGCCAUUGGCGuugacggugaccGCaCGGUagGUGCc -3'
miRNA:   3'- -GCUACGGUAGCCGC------------UG-GUCAggUACG- -5'
11919 3' -55.2 NC_003278.1 + 5210 0.71 0.311049
Target:  5'- ---cGCCAcCGGUGACCGGgggCCGcUGCu -3'
miRNA:   3'- gcuaCGGUaGCCGCUGGUCa--GGU-ACG- -5'
11919 3' -55.2 NC_003278.1 + 29641 0.71 0.303222
Target:  5'- uCGAgGCCAcCGGCGagGCCGGUgCcgGCa -3'
miRNA:   3'- -GCUaCGGUaGCCGC--UGGUCAgGuaCG- -5'
11919 3' -55.2 NC_003278.1 + 22008 0.71 0.303222
Target:  5'- uCGGUGCCcagcCGGCGcGCCAGUUCGUcggucGCg -3'
miRNA:   3'- -GCUACGGua--GCCGC-UGGUCAGGUA-----CG- -5'
11919 3' -55.2 NC_003278.1 + 16886 0.72 0.265659
Target:  5'- aGAcGCCAUCuGCGaagagggcuucgaGCCAGUCCgGUGCg -3'
miRNA:   3'- gCUaCGGUAGcCGC-------------UGGUCAGG-UACG- -5'
11919 3' -55.2 NC_003278.1 + 14602 0.73 0.239547
Target:  5'- aCGAUGCCGUCGucgaUGAUCAGuucgacgugcUCCAUGCc -3'
miRNA:   3'- -GCUACGGUAGCc---GCUGGUC----------AGGUACG- -5'
11919 3' -55.2 NC_003278.1 + 22679 0.73 0.227007
Target:  5'- aGGUGCCcUUGuCGACCAGUCCGcUGUc -3'
miRNA:   3'- gCUACGGuAGCcGCUGGUCAGGU-ACG- -5'
11919 3' -55.2 NC_003278.1 + 14419 0.74 0.209244
Target:  5'- cCGAUgGCCAUCGGCaGuACCAG-CUcgGCg -3'
miRNA:   3'- -GCUA-CGGUAGCCG-C-UGGUCaGGuaCG- -5'
11919 3' -55.2 NC_003278.1 + 23475 0.75 0.1773
Target:  5'- cCGGUGUCGUCGGCcaggucgcuGACCAgGUCCucggGCa -3'
miRNA:   3'- -GCUACGGUAGCCG---------CUGGU-CAGGua--CG- -5'
11919 3' -55.2 NC_003278.1 + 22273 0.76 0.16301
Target:  5'- gGGUGCCGUCGGCGAagaagaguguCCGcGUCUcgGUg -3'
miRNA:   3'- gCUACGGUAGCCGCU----------GGU-CAGGuaCG- -5'
11919 3' -55.2 NC_003278.1 + 3299 0.76 0.149764
Target:  5'- uGAUGCgAUCGGCGGCCGG-CU-UGCc -3'
miRNA:   3'- gCUACGgUAGCCGCUGGUCaGGuACG- -5'
11919 3' -55.2 NC_003278.1 + 20527 0.77 0.129851
Target:  5'- ---cGCCGUCgagGGCGGCCAGUuccagaCCAUGCg -3'
miRNA:   3'- gcuaCGGUAG---CCGCUGGUCA------GGUACG- -5'
11919 3' -55.2 NC_003278.1 + 8777 1.13 0.000333
Target:  5'- gCGAUGCCAUCGGCGACCAGUCCAUGCg -3'
miRNA:   3'- -GCUACGGUAGCCGCUGGUCAGGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.