miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1192 3' -54.9 NC_001132.2 + 3418 0.66 0.956574
Target:  5'- gGAACgaauUCgGCGCGGACGACagCGUGa -3'
miRNA:   3'- aUUUGgc--AGgCGCGCUUGCUGa-GCGC- -5'
1192 3' -54.9 NC_001132.2 + 9306 0.66 0.956195
Target:  5'- cGAACUGUCCGUccccaagGCGAGCGuuACg-GCGa -3'
miRNA:   3'- aUUUGGCAGGCG-------CGCUUGC--UGagCGC- -5'
1192 3' -54.9 NC_001132.2 + 49709 0.66 0.952686
Target:  5'- -uAAUCGUCUGC-UGggUGGCUCGUu -3'
miRNA:   3'- auUUGGCAGGCGcGCuuGCUGAGCGc -5'
1192 3' -54.9 NC_001132.2 + 11669 0.67 0.934833
Target:  5'- cGAGUCGUUCGCGCGGACGGuuuauaCGUGg -3'
miRNA:   3'- aUUUGGCAGGCGCGCUUGCUga----GCGC- -5'
1192 3' -54.9 NC_001132.2 + 151482 0.67 0.913208
Target:  5'- --uGCCuUCCGCGaCGAuuuCGACgUCGCa -3'
miRNA:   3'- auuUGGcAGGCGC-GCUu--GCUG-AGCGc -5'
1192 3' -54.9 NC_001132.2 + 87114 0.7 0.800685
Target:  5'- cAAACUGUCUGUGCGggUuGugUuCGCGu -3'
miRNA:   3'- aUUUGGCAGGCGCGCuuG-CugA-GCGC- -5'
1192 3' -54.9 NC_001132.2 + 150290 1.07 0.005794
Target:  5'- aUAAACCGUCCGCGCGAACGACUCGCGu -3'
miRNA:   3'- -AUUUGGCAGGCGCGCUUGCUGAGCGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.