miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11922 3' -59.8 NC_003278.1 + 19013 0.66 0.350021
Target:  5'- uGGCCUcgGGCUCGGugauGGucggcuggcugauGCGCGGcAGGAUUu -3'
miRNA:   3'- -CCGGA--CCGAGCU----CC-------------CGCGCC-UCUUAG- -5'
11922 3' -59.8 NC_003278.1 + 33164 0.67 0.295454
Target:  5'- cGGCCUGaGCgacagCGAcuGGCGCGaGcGGAUCg -3'
miRNA:   3'- -CCGGAC-CGa----GCUc-CCGCGC-CuCUUAG- -5'
11922 3' -59.8 NC_003278.1 + 30097 0.67 0.288118
Target:  5'- cGGCCUGGCUCucgcGGGUGauuucCGGGcGAAUg -3'
miRNA:   3'- -CCGGACCGAGcu--CCCGC-----GCCU-CUUAg -5'
11922 3' -59.8 NC_003278.1 + 7042 0.7 0.183532
Target:  5'- aGGaCCUGGCagaUCGgccccgagccggcGGGGCGCGGGGuacgcucGGUCa -3'
miRNA:   3'- -CC-GGACCG---AGC-------------UCCCGCGCCUC-------UUAG- -5'
11922 3' -59.8 NC_003278.1 + 22307 0.71 0.159685
Target:  5'- cGCUUGaGCUCGAGGGagaacucgauccgcCGCGGGGugccGUCg -3'
miRNA:   3'- cCGGAC-CGAGCUCCC--------------GCGCCUCu---UAG- -5'
11922 3' -59.8 NC_003278.1 + 22140 0.73 0.118539
Target:  5'- cGGCCUGGCccauggUCGAGGGCacCGGAcGcAUCu -3'
miRNA:   3'- -CCGGACCG------AGCUCCCGc-GCCU-CuUAG- -5'
11922 3' -59.8 NC_003278.1 + 10548 1.11 0.00013
Target:  5'- gGGCCUGGCUCGAGGGCGCGGAGAAUCg -3'
miRNA:   3'- -CCGGACCGAGCUCCCGCGCCUCUUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.