miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11922 5' -56 NC_003278.1 + 29623 0.66 0.561876
Target:  5'- uCCAGUCcuUUCCGuu-CCUCGAGGCc-- -3'
miRNA:   3'- -GGUCAG--AAGGUcucGGAGCUCCGaca -5'
11922 5' -56 NC_003278.1 + 22544 0.66 0.507084
Target:  5'- gUCGGUCaggUCCAGGGCgaucagUCGuGGGCUGa -3'
miRNA:   3'- -GGUCAGa--AGGUCUCGg-----AGC-UCCGACa -5'
11922 5' -56 NC_003278.1 + 29697 0.67 0.485797
Target:  5'- aCCGGcCUcgCCGGuGGCCUCGAGGa--- -3'
miRNA:   3'- -GGUCaGAa-GGUC-UCGGAGCUCCgaca -5'
11922 5' -56 NC_003278.1 + 21454 0.67 0.464944
Target:  5'- gCCGGcCUggcCCAGGGCCUCGGcgccGGCc-- -3'
miRNA:   3'- -GGUCaGAa--GGUCUCGGAGCU----CCGaca -5'
11922 5' -56 NC_003278.1 + 6723 0.68 0.434567
Target:  5'- gCCGGUCUUCU-GuGCCUUGAGcGCg-- -3'
miRNA:   3'- -GGUCAGAAGGuCuCGGAGCUC-CGaca -5'
11922 5' -56 NC_003278.1 + 5905 0.7 0.342272
Target:  5'- aCCAcGUCgaacaCCAGGGCgUCGAGGUucuUGUa -3'
miRNA:   3'- -GGU-CAGaa---GGUCUCGgAGCUCCG---ACA- -5'
11922 5' -56 NC_003278.1 + 8298 0.7 0.301724
Target:  5'- aCCuuGUCgacCCAGGcgaccGCCUUGAGGCUGa -3'
miRNA:   3'- -GGu-CAGaa-GGUCU-----CGGAGCUCCGACa -5'
11922 5' -56 NC_003278.1 + 10514 1.09 0.000491
Target:  5'- cCCAGUCUUCCAGAGCCUCGAGGCUGUc -3'
miRNA:   3'- -GGUCAGAAGGUCUCGGAGCUCCGACA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.