miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11923 5' -57.8 NC_003278.1 + 26876 0.66 0.473062
Target:  5'- gGCGaCGCCCcUGGCGUaCAGGUcgaGGUu -3'
miRNA:   3'- -CGCaGCGGGaACCGCGcGUCUA---UCGc -5'
11923 5' -57.8 NC_003278.1 + 27531 0.66 0.473062
Target:  5'- aGCGaagaccUCGUCCcaGGCGCGCug--GGCGa -3'
miRNA:   3'- -CGC------AGCGGGaaCCGCGCGucuaUCGC- -5'
11923 5' -57.8 NC_003278.1 + 9630 0.66 0.473062
Target:  5'- -gGUCGgCCUgggccUGGCGCucGCGGGaaagGGCGg -3'
miRNA:   3'- cgCAGCgGGA-----ACCGCG--CGUCUa---UCGC- -5'
11923 5' -57.8 NC_003278.1 + 33084 0.66 0.462869
Target:  5'- uCGuUCGCCUUcGGCauGCGCGGAUcGGCc -3'
miRNA:   3'- cGC-AGCGGGAaCCG--CGCGUCUA-UCGc -5'
11923 5' -57.8 NC_003278.1 + 23093 0.66 0.452793
Target:  5'- aGCuGUCGCggUcGGCcUGCAGGUAGCGg -3'
miRNA:   3'- -CG-CAGCGggAaCCGcGCGUCUAUCGC- -5'
11923 5' -57.8 NC_003278.1 + 20093 0.66 0.442837
Target:  5'- aUGUCGCCCgcGGCuGC-CAGGUugAGCa -3'
miRNA:   3'- cGCAGCGGGaaCCG-CGcGUCUA--UCGc -5'
11923 5' -57.8 NC_003278.1 + 3470 0.66 0.433006
Target:  5'- -gGUCGCCagcgguaUGGCGaUGCAGA-AGCGc -3'
miRNA:   3'- cgCAGCGGga-----ACCGC-GCGUCUaUCGC- -5'
11923 5' -57.8 NC_003278.1 + 19671 0.66 0.433006
Target:  5'- -gGcCGCCUggaucUGcGCGCGCAGGUcGCGc -3'
miRNA:   3'- cgCaGCGGGa----AC-CGCGCGUCUAuCGC- -5'
11923 5' -57.8 NC_003278.1 + 7708 0.66 0.423303
Target:  5'- cCGUCGUCCgagacGaGCGCGCcuGGggAGCGa -3'
miRNA:   3'- cGCAGCGGGaa---C-CGCGCG--UCuaUCGC- -5'
11923 5' -57.8 NC_003278.1 + 32308 0.66 0.423303
Target:  5'- aUGUCGCCgacGGCGCGCAGGc---- -3'
miRNA:   3'- cGCAGCGGgaaCCGCGCGUCUaucgc -5'
11923 5' -57.8 NC_003278.1 + 18917 0.67 0.413731
Target:  5'- cGCGcaguUCGCCagaggagGGCuuGCGCAGGgugAGCGa -3'
miRNA:   3'- -CGC----AGCGGgaa----CCG--CGCGUCUa--UCGC- -5'
11923 5' -57.8 NC_003278.1 + 31156 0.67 0.404295
Target:  5'- gGCGcccagCGCCCUcUGGUGCGaGGAcuGCGg -3'
miRNA:   3'- -CGCa----GCGGGA-ACCGCGCgUCUauCGC- -5'
11923 5' -57.8 NC_003278.1 + 14108 0.67 0.394995
Target:  5'- uCGUCGCCaggccgUGGCGgGCcaGGAUguccGGCGu -3'
miRNA:   3'- cGCAGCGGga----ACCGCgCG--UCUA----UCGC- -5'
11923 5' -57.8 NC_003278.1 + 22451 0.67 0.391314
Target:  5'- gGCGUCGCgCUgcaacuggucgacGGCGCugguCAGGUAGCc -3'
miRNA:   3'- -CGCAGCGgGAa------------CCGCGc---GUCUAUCGc -5'
11923 5' -57.8 NC_003278.1 + 26834 0.67 0.384019
Target:  5'- gGCGUCGCCaccgccaucaGGCGCGguGA-GGuCGa -3'
miRNA:   3'- -CGCAGCGGgaa-------CCGCGCguCUaUC-GC- -5'
11923 5' -57.8 NC_003278.1 + 19514 0.68 0.350623
Target:  5'- -aGUCGCgggUGaGCGCGCGGGUGGgGu -3'
miRNA:   3'- cgCAGCGggaAC-CGCGCGUCUAUCgC- -5'
11923 5' -57.8 NC_003278.1 + 29555 0.68 0.32575
Target:  5'- gGCGguaGUCCUUGGCGUc--GGUGGCGa -3'
miRNA:   3'- -CGCag-CGGGAACCGCGcguCUAUCGC- -5'
11923 5' -57.8 NC_003278.1 + 28580 0.69 0.30991
Target:  5'- gGCGUCGaugCCgUGGUGCaGCAgcgcGAUGGCGu -3'
miRNA:   3'- -CGCAGCg--GGaACCGCG-CGU----CUAUCGC- -5'
11923 5' -57.8 NC_003278.1 + 19606 0.69 0.294663
Target:  5'- aGCG-CGaCCUgcGCGCGCAGAUccaGGCGg -3'
miRNA:   3'- -CGCaGCgGGAacCGCGCGUCUA---UCGC- -5'
11923 5' -57.8 NC_003278.1 + 23602 0.75 0.113632
Target:  5'- cGCGcUGCCCUUGGUgcuguacaaguaGCGCAGGcGGCGc -3'
miRNA:   3'- -CGCaGCGGGAACCG------------CGCGUCUaUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.