miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11924 3' -55.2 NC_003278.1 + 2152 0.74 0.223375
Target:  5'- aCGUCGCC-CGGCuga-GCAGGCGGUGc -3'
miRNA:   3'- -GCAGUGGuGCUGuugcCGUCCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 2571 0.66 0.623938
Target:  5'- uGUCGuuGCGGcCGGCGGUauAGGUGAa- -3'
miRNA:   3'- gCAGUggUGCU-GUUGCCG--UCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 2850 0.68 0.480949
Target:  5'- uCGaCACCAcCGGCAugGGCucuGGCGu-- -3'
miRNA:   3'- -GCaGUGGU-GCUGUugCCGu--CCGCuac -5'
11924 3' -55.2 NC_003278.1 + 3470 0.66 0.60135
Target:  5'- gGUCGCCA-----GCGGUAuGGCGAUGc -3'
miRNA:   3'- gCAGUGGUgcuguUGCCGU-CCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 5522 0.74 0.194351
Target:  5'- cCGUCGCCA-GugGuaucgguACGGCuGGCGAUGg -3'
miRNA:   3'- -GCAGUGGUgCugU-------UGCCGuCCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 7454 0.67 0.567698
Target:  5'- --cCGCCGCGAcCAGCGcUGGGCGAUc -3'
miRNA:   3'- gcaGUGGUGCU-GUUGCcGUCCGCUAc -5'
11924 3' -55.2 NC_003278.1 + 8587 0.67 0.545525
Target:  5'- aCGUUGCCGCGGgAACGgaagaucaGCAGGCa--- -3'
miRNA:   3'- -GCAGUGGUGCUgUUGC--------CGUCCGcuac -5'
11924 3' -55.2 NC_003278.1 + 8884 0.69 0.398331
Target:  5'- uCGUCGCCAgCGGCAGgucgaggcgagcucCGGC-GGCGAc- -3'
miRNA:   3'- -GCAGUGGU-GCUGUU--------------GCCGuCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 9003 0.67 0.534541
Target:  5'- gGUgACCugauCGugGGCGGCGagacGGCGGUa -3'
miRNA:   3'- gCAgUGGu---GCugUUGCCGU----CCGCUAc -5'
11924 3' -55.2 NC_003278.1 + 10021 0.66 0.586722
Target:  5'- gGUCGCCGuuguuccugaguucCGGC-ACGGC-GGCGAg- -3'
miRNA:   3'- gCAGUGGU--------------GCUGuUGCCGuCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 11863 0.75 0.169627
Target:  5'- gGUcCACCGCGGCGAUGGUgccgAGGCGGa- -3'
miRNA:   3'- gCA-GUGGUGCUGUUGCCG----UCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 12046 0.67 0.523637
Target:  5'- uCG-CACCACcuaccGCGACGGCGcGGUGAUu -3'
miRNA:   3'- -GCaGUGGUGc----UGUUGCCGU-CCGCUAc -5'
11924 3' -55.2 NC_003278.1 + 12110 0.76 0.16037
Target:  5'- -aUCACCGCGcCGucGCGGUAGGUGGUGc -3'
miRNA:   3'- gcAGUGGUGCuGU--UGCCGUCCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 12137 0.69 0.420319
Target:  5'- -cUCAUCAgCGACGGCGGCAuccgcaucgucGGCGAc- -3'
miRNA:   3'- gcAGUGGU-GCUGUUGCCGU-----------CCGCUac -5'
11924 3' -55.2 NC_003278.1 + 12272 0.67 0.545525
Target:  5'- gGUCAuacCCACGGCGGCGucauacCGGGCGGc- -3'
miRNA:   3'- gCAGU---GGUGCUGUUGCc-----GUCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 12596 0.66 0.590092
Target:  5'- gGUgAUCugGAC-ACGGCucAGGCGGa- -3'
miRNA:   3'- gCAgUGGugCUGuUGCCG--UCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 13225 1.09 0.000574
Target:  5'- cCGUCACCACGACAACGGCAGGCGAUGg -3'
miRNA:   3'- -GCAGUGGUGCUGUUGCCGUCCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 13372 0.66 0.612635
Target:  5'- gCGUCGCguCGAC-ACGGUacucgagcacuuGGGCGGa- -3'
miRNA:   3'- -GCAGUGguGCUGuUGCCG------------UCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 14108 0.71 0.306227
Target:  5'- uCGUCGCCA-GGCcgUGGCGGGCcagGAUGu -3'
miRNA:   3'- -GCAGUGGUgCUGuuGCCGUCCG---CUAC- -5'
11924 3' -55.2 NC_003278.1 + 16677 0.66 0.578872
Target:  5'- aCGUCACCGCGACGAgcucgaGGUuGGUa--- -3'
miRNA:   3'- -GCAGUGGUGCUGUUg-----CCGuCCGcuac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.