miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11924 3' -55.2 NC_003278.1 + 2850 0.68 0.480949
Target:  5'- uCGaCACCAcCGGCAugGGCucuGGCGu-- -3'
miRNA:   3'- -GCaGUGGU-GCUGUugCCGu--CCGCuac -5'
11924 3' -55.2 NC_003278.1 + 31858 0.68 0.460246
Target:  5'- --cCGCCGCGcCGcCGGCGGGCGccGa -3'
miRNA:   3'- gcaGUGGUGCuGUuGCCGUCCGCuaC- -5'
11924 3' -55.2 NC_003278.1 + 12137 0.69 0.420319
Target:  5'- -cUCAUCAgCGACGGCGGCAuccgcaucgucGGCGAc- -3'
miRNA:   3'- gcAGUGGU-GCUGUUGCCGU-----------CCGCUac -5'
11924 3' -55.2 NC_003278.1 + 19977 0.69 0.410668
Target:  5'- --cUugCugGACAGCGGCAgGGUGcgGg -3'
miRNA:   3'- gcaGugGugCUGUUGCCGU-CCGCuaC- -5'
11924 3' -55.2 NC_003278.1 + 8884 0.69 0.398331
Target:  5'- uCGUCGCCAgCGGCAGgucgaggcgagcucCGGC-GGCGAc- -3'
miRNA:   3'- -GCAGUGGU-GCUGUU--------------GCCGuCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 21321 0.7 0.391786
Target:  5'- aGUCGCUgaaGCG-CGcCGGCAGGuCGAUGc -3'
miRNA:   3'- gCAGUGG---UGCuGUuGCCGUCC-GCUAC- -5'
11924 3' -55.2 NC_003278.1 + 30814 0.7 0.373478
Target:  5'- cCGaUCGCCcagcGCGACAGCGGcCAGaGCGGc- -3'
miRNA:   3'- -GC-AGUGG----UGCUGUUGCC-GUC-CGCUac -5'
11924 3' -55.2 NC_003278.1 + 30866 0.71 0.34627
Target:  5'- uGUCGCgCugGGCGAuCGGCAGcaggcguuucagcGCGGUGa -3'
miRNA:   3'- gCAGUG-GugCUGUU-GCCGUC-------------CGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 14108 0.71 0.306227
Target:  5'- uCGUCGCCA-GGCcgUGGCGGGCcagGAUGu -3'
miRNA:   3'- -GCAGUGGUgCUGuuGCCGUCCG---CUAC- -5'
11924 3' -55.2 NC_003278.1 + 2152 0.74 0.223375
Target:  5'- aCGUCGCC-CGGCuga-GCAGGCGGUGc -3'
miRNA:   3'- -GCAGUGGuGCUGuugcCGUCCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 5522 0.74 0.194351
Target:  5'- cCGUCGCCA-GugGuaucgguACGGCuGGCGAUGg -3'
miRNA:   3'- -GCAGUGGUgCugU-------UGCCGuCCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 11863 0.75 0.169627
Target:  5'- gGUcCACCGCGGCGAUGGUgccgAGGCGGa- -3'
miRNA:   3'- gCA-GUGGUGCUGUUGCCG----UCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 12110 0.76 0.16037
Target:  5'- -aUCACCGCGcCGucGCGGUAGGUGGUGc -3'
miRNA:   3'- gcAGUGGUGCuGU--UGCCGUCCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 17521 0.77 0.135277
Target:  5'- -uUCGCgCGCGGCGaaguucucGCGGUAGGCGGUGg -3'
miRNA:   3'- gcAGUG-GUGCUGU--------UGCCGUCCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 13225 1.09 0.000574
Target:  5'- cCGUCACCACGACAACGGCAGGCGAUGg -3'
miRNA:   3'- -GCAGUGGUGCUGUUGCCGUCCGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.