miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11924 5' -60 NC_003278.1 + 19727 0.67 0.372375
Target:  5'- cGGCAUCcagagcgcuGCCG-CGCuGGCCGgcaccggcaUGGCGGc -3'
miRNA:   3'- -CCGUAG---------CGGCuGCG-CUGGCa--------GCCGCC- -5'
11924 5' -60 NC_003278.1 + 5564 0.67 0.372375
Target:  5'- cGCugGUUGUCGAgCGCGGacaCGUCGcGCGGc -3'
miRNA:   3'- cCG--UAGCGGCU-GCGCUg--GCAGC-CGCC- -5'
11924 5' -60 NC_003278.1 + 4494 0.67 0.372375
Target:  5'- aGUcgCGCuCGAuguUGCGGCCGUCcGUGGu -3'
miRNA:   3'- cCGuaGCG-GCU---GCGCUGGCAGcCGCC- -5'
11924 5' -60 NC_003278.1 + 12076 0.67 0.372375
Target:  5'- gGGCGUCGCgGu--CG-CCGUUgGGCGGg -3'
miRNA:   3'- -CCGUAGCGgCugcGCuGGCAG-CCGCC- -5'
11924 5' -60 NC_003278.1 + 9555 0.67 0.367274
Target:  5'- gGGCGUCGCUGGCuuuccucgccaacuCGGCCuGggccaGGCGGg -3'
miRNA:   3'- -CCGUAGCGGCUGc-------------GCUGG-Cag---CCGCC- -5'
11924 5' -60 NC_003278.1 + 31633 0.67 0.361384
Target:  5'- cGGCggCGCCGcaggcuucaaccggGCGCGuCCGcgggUCGGCa- -3'
miRNA:   3'- -CCGuaGCGGC--------------UGCGCuGGC----AGCCGcc -5'
11924 5' -60 NC_003278.1 + 8874 0.67 0.35556
Target:  5'- cGGCAg-GUCGAgGCGAgcuCCGgCGGCGa -3'
miRNA:   3'- -CCGUagCGGCUgCGCU---GGCaGCCGCc -5'
11924 5' -60 NC_003278.1 + 26828 0.67 0.35556
Target:  5'- gGGCAUCuGCaCGAacaUGCcGCCGUauaGGUGGg -3'
miRNA:   3'- -CCGUAG-CG-GCU---GCGcUGGCAg--CCGCC- -5'
11924 5' -60 NC_003278.1 + 33015 0.67 0.35556
Target:  5'- aGCGUgGCCGAucCGCGcauGCCGaaGGCGa -3'
miRNA:   3'- cCGUAgCGGCU--GCGC---UGGCagCCGCc -5'
11924 5' -60 NC_003278.1 + 22209 0.67 0.35556
Target:  5'- cGCGgacacucuucuUCGCCGACgGCaccCCG-CGGCGGa -3'
miRNA:   3'- cCGU-----------AGCGGCUG-CGcu-GGCaGCCGCC- -5'
11924 5' -60 NC_003278.1 + 5000 0.67 0.346543
Target:  5'- aGCgAUCGCCGAgcacagcCGCGACCuGggugagcaacUCGGCGa -3'
miRNA:   3'- cCG-UAGCGGCU-------GCGCUGG-C----------AGCCGCc -5'
11924 5' -60 NC_003278.1 + 21669 0.67 0.339288
Target:  5'- aGCAUgGCCaGCaGCGGCuggucgaaCGUCGGUGGc -3'
miRNA:   3'- cCGUAgCGGcUG-CGCUG--------GCAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 22004 0.67 0.339288
Target:  5'- cGCAUCggugcccaGCCGGCGCGccaguUCGUCGgucGCGGc -3'
miRNA:   3'- cCGUAG--------CGGCUGCGCu----GGCAGC---CGCC- -5'
11924 5' -60 NC_003278.1 + 13463 0.68 0.331356
Target:  5'- aGGCGUcgaCGCUGAUGgacguaGGCCGUCaaGCGGg -3'
miRNA:   3'- -CCGUA---GCGGCUGCg-----CUGGCAGc-CGCC- -5'
11924 5' -60 NC_003278.1 + 22879 0.68 0.323562
Target:  5'- cGGCAggcccgccagCGCCGGCGCGAgCacCGGCu- -3'
miRNA:   3'- -CCGUa---------GCGGCUGCGCUgGcaGCCGcc -5'
11924 5' -60 NC_003278.1 + 29246 0.68 0.323562
Target:  5'- cGGCGUggcCGCCGGUGCGAucuucaCCGgcagCGGCGc -3'
miRNA:   3'- -CCGUA---GCGGCUGCGCU------GGCa---GCCGCc -5'
11924 5' -60 NC_003278.1 + 17824 0.68 0.32279
Target:  5'- uGGCcgacacuAUCGCCGAaGCGcACaUGUgGGCGGu -3'
miRNA:   3'- -CCG-------UAGCGGCUgCGC-UG-GCAgCCGCC- -5'
11924 5' -60 NC_003278.1 + 30346 0.68 0.315905
Target:  5'- cGuCAaCGCCGACGCGcCCGa-GGUGGc -3'
miRNA:   3'- cC-GUaGCGGCUGCGCuGGCagCCGCC- -5'
11924 5' -60 NC_003278.1 + 28176 0.68 0.315905
Target:  5'- aGGUGUCGCCGcacuugcCGCGcCCG-CaGCGGa -3'
miRNA:   3'- -CCGUAGCGGCu------GCGCuGGCaGcCGCC- -5'
11924 5' -60 NC_003278.1 + 32251 0.68 0.315905
Target:  5'- -----aGCCuGCGCG-CCGUCGGCGa -3'
miRNA:   3'- ccguagCGGcUGCGCuGGCAGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.