Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11926 | 3' | -60.8 | NC_003278.1 | + | 7786 | 0.66 | 0.356957 |
Target: 5'- -aCCGcCGGCGugaccgaggcggUCCUCGAGG-CGAa- -3' miRNA: 3'- agGGCaGCCGC------------AGGAGCUCCgGCUag -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 9525 | 0.66 | 0.356957 |
Target: 5'- uUCCCGccaggcCGGCaccaucacgGcCCUCGAGGCCGc-- -3' miRNA: 3'- -AGGGCa-----GCCG---------CaGGAGCUCCGGCuag -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 6976 | 0.66 | 0.340474 |
Target: 5'- cCCCGcCGGC-----UGGGGCCGAUCu -3' miRNA: 3'- aGGGCaGCCGcaggaGCUCCGGCUAG- -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 18595 | 0.66 | 0.332442 |
Target: 5'- aUCuuGugcUCGGUGUCUUCGccGGGCUGggCg -3' miRNA: 3'- -AGggC---AGCCGCAGGAGC--UCCGGCuaG- -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 31922 | 0.66 | 0.332442 |
Target: 5'- aUCCgGUCGGCGcCCgccggCGGcgcGGCgGAUUu -3' miRNA: 3'- -AGGgCAGCCGCaGGa----GCU---CCGgCUAG- -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 32260 | 0.66 | 0.316798 |
Target: 5'- -gCCGUCGGCGacaUCCUC--GGCCGcAUg -3' miRNA: 3'- agGGCAGCCGC---AGGAGcuCCGGC-UAg -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 8289 | 0.67 | 0.309186 |
Target: 5'- aCCCa--GGCGaccgCCUUGAGGCUGAg- -3' miRNA: 3'- aGGGcagCCGCa---GGAGCUCCGGCUag -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 13305 | 0.67 | 0.309186 |
Target: 5'- -aCgGUCGGCGUCgUUGAGGUaggcGUCg -3' miRNA: 3'- agGgCAGCCGCAGgAGCUCCGgc--UAG- -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 26720 | 0.67 | 0.309186 |
Target: 5'- -gCUGcCGGCGUUCUCGuAGGCgUGGUUg -3' miRNA: 3'- agGGCaGCCGCAGGAGC-UCCG-GCUAG- -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 13134 | 0.67 | 0.280138 |
Target: 5'- gUCgCGUCGGCGaugCCUC--GGCCG-UCa -3' miRNA: 3'- -AGgGCAGCCGCa--GGAGcuCCGGCuAG- -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 16701 | 0.67 | 0.273224 |
Target: 5'- --gCGUCGGUGUCgUCGAGcuGgCGGUCg -3' miRNA: 3'- aggGCAGCCGCAGgAGCUC--CgGCUAG- -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 29966 | 0.7 | 0.180465 |
Target: 5'- gUCUCGUugcCGGCgGUCUUCu-GGCCGGUCa -3' miRNA: 3'- -AGGGCA---GCCG-CAGGAGcuCCGGCUAG- -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 22504 | 0.74 | 0.101548 |
Target: 5'- -aCCGacaaUC-GCGgCCUCGAGGCCGAUCa -3' miRNA: 3'- agGGC----AGcCGCaGGAGCUCCGGCUAG- -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 17103 | 0.75 | 0.074477 |
Target: 5'- --gCGUCGGCGUCUUCGgcgguggcuaccAGGCCGAUg -3' miRNA: 3'- aggGCAGCCGCAGGAGC------------UCCGGCUAg -5' |
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11926 | 3' | -60.8 | NC_003278.1 | + | 14464 | 1.09 | 0.000188 |
Target: 5'- uUCCCGUCGGCGUCCUCGAGGCCGAUCu -3' miRNA: 3'- -AGGGCAGCCGCAGGAGCUCCGGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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