miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11926 3' -60.8 NC_003278.1 + 9525 0.66 0.356957
Target:  5'- uUCCCGccaggcCGGCaccaucacgGcCCUCGAGGCCGc-- -3'
miRNA:   3'- -AGGGCa-----GCCG---------CaGGAGCUCCGGCuag -5'
11926 3' -60.8 NC_003278.1 + 7786 0.66 0.356957
Target:  5'- -aCCGcCGGCGugaccgaggcggUCCUCGAGG-CGAa- -3'
miRNA:   3'- agGGCaGCCGC------------AGGAGCUCCgGCUag -5'
11926 3' -60.8 NC_003278.1 + 6976 0.66 0.340474
Target:  5'- cCCCGcCGGC-----UGGGGCCGAUCu -3'
miRNA:   3'- aGGGCaGCCGcaggaGCUCCGGCUAG- -5'
11926 3' -60.8 NC_003278.1 + 31922 0.66 0.332442
Target:  5'- aUCCgGUCGGCGcCCgccggCGGcgcGGCgGAUUu -3'
miRNA:   3'- -AGGgCAGCCGCaGGa----GCU---CCGgCUAG- -5'
11926 3' -60.8 NC_003278.1 + 18595 0.66 0.332442
Target:  5'- aUCuuGugcUCGGUGUCUUCGccGGGCUGggCg -3'
miRNA:   3'- -AGggC---AGCCGCAGGAGC--UCCGGCuaG- -5'
11926 3' -60.8 NC_003278.1 + 32260 0.66 0.316798
Target:  5'- -gCCGUCGGCGacaUCCUC--GGCCGcAUg -3'
miRNA:   3'- agGGCAGCCGC---AGGAGcuCCGGC-UAg -5'
11926 3' -60.8 NC_003278.1 + 8289 0.67 0.309186
Target:  5'- aCCCa--GGCGaccgCCUUGAGGCUGAg- -3'
miRNA:   3'- aGGGcagCCGCa---GGAGCUCCGGCUag -5'
11926 3' -60.8 NC_003278.1 + 13305 0.67 0.309186
Target:  5'- -aCgGUCGGCGUCgUUGAGGUaggcGUCg -3'
miRNA:   3'- agGgCAGCCGCAGgAGCUCCGgc--UAG- -5'
11926 3' -60.8 NC_003278.1 + 26720 0.67 0.309186
Target:  5'- -gCUGcCGGCGUUCUCGuAGGCgUGGUUg -3'
miRNA:   3'- agGGCaGCCGCAGGAGC-UCCG-GCUAG- -5'
11926 3' -60.8 NC_003278.1 + 13134 0.67 0.280138
Target:  5'- gUCgCGUCGGCGaugCCUC--GGCCG-UCa -3'
miRNA:   3'- -AGgGCAGCCGCa--GGAGcuCCGGCuAG- -5'
11926 3' -60.8 NC_003278.1 + 16701 0.67 0.273224
Target:  5'- --gCGUCGGUGUCgUCGAGcuGgCGGUCg -3'
miRNA:   3'- aggGCAGCCGCAGgAGCUC--CgGCUAG- -5'
11926 3' -60.8 NC_003278.1 + 29966 0.7 0.180465
Target:  5'- gUCUCGUugcCGGCgGUCUUCu-GGCCGGUCa -3'
miRNA:   3'- -AGGGCA---GCCG-CAGGAGcuCCGGCUAG- -5'
11926 3' -60.8 NC_003278.1 + 22504 0.74 0.101548
Target:  5'- -aCCGacaaUC-GCGgCCUCGAGGCCGAUCa -3'
miRNA:   3'- agGGC----AGcCGCaGGAGCUCCGGCUAG- -5'
11926 3' -60.8 NC_003278.1 + 17103 0.75 0.074477
Target:  5'- --gCGUCGGCGUCUUCGgcgguggcuaccAGGCCGAUg -3'
miRNA:   3'- aggGCAGCCGCAGGAGC------------UCCGGCUAg -5'
11926 3' -60.8 NC_003278.1 + 14464 1.09 0.000188
Target:  5'- uUCCCGUCGGCGUCCUCGAGGCCGAUCu -3'
miRNA:   3'- -AGGGCAGCCGCAGGAGCUCCGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.