Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11926 | 5' | -55.3 | NC_003278.1 | + | 4952 | 0.67 | 0.48228 |
Target: 5'- aGGAAgCCcgcacccaaGCCGAguucGGCCAggUCGGCGGg -3' miRNA: 3'- -UCUUaGG---------UGGCUa---CCGGU--AGCCGUCa -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 8620 | 0.66 | 0.581452 |
Target: 5'- aAGggUCaUGCgGAUGGCC-UCaGCAGg -3' miRNA: 3'- -UCuuAG-GUGgCUACCGGuAGcCGUCa -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 8784 | 0.66 | 0.592811 |
Target: 5'- cGGG-CCAgCGAU-GCCAUCGGCGa- -3' miRNA: 3'- uCUUaGGUgGCUAcCGGUAGCCGUca -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 14367 | 0.8 | 0.074104 |
Target: 5'- ----aCUGCCGAUGGCCAUCGGUGGa -3' miRNA: 3'- ucuuaGGUGGCUACCGGUAGCCGUCa -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 14428 | 1.08 | 0.00062 |
Target: 5'- cAGAAUCCACCGAUGGCCAUCGGCAGUa -3' miRNA: 3'- -UCUUAGGUGGCUACCGGUAGCCGUCA- -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 19027 | 0.73 | 0.21246 |
Target: 5'- cGggUCCauGCCGGUGGCCucgggcucggugaugGUCGGCuGg -3' miRNA: 3'- uCuuAGG--UGGCUACCGG---------------UAGCCGuCa -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 20327 | 0.68 | 0.420886 |
Target: 5'- uGGAcgCCagcguuGCCGAgcagGGCCGU-GGCGGUg -3' miRNA: 3'- -UCUuaGG------UGGCUa---CCGGUAgCCGUCA- -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 22285 | 0.72 | 0.254173 |
Target: 5'- -cGAUCCGCCGcgGgguGCCGUCGGCGa- -3' miRNA: 3'- ucUUAGGUGGCuaC---CGGUAGCCGUca -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 23484 | 0.66 | 0.570139 |
Target: 5'- uAGucgCCGCCGGU-GUCGUCGGcCAGg -3' miRNA: 3'- -UCuuaGGUGGCUAcCGGUAGCC-GUCa -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 29642 | 0.66 | 0.536562 |
Target: 5'- cGAggCCACCGGcgaGGCCGgugcCGGCAa- -3' miRNA: 3'- uCUuaGGUGGCUa--CCGGUa---GCCGUca -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 30164 | 0.68 | 0.420886 |
Target: 5'- -----gCGCgGAUGGCCAUCaGCAGg -3' miRNA: 3'- ucuuagGUGgCUACCGGUAGcCGUCa -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 30477 | 0.66 | 0.589399 |
Target: 5'- uGAAgcuggCCGCCGAccaccgccagaaggUGGCCGacgCGGCAa- -3' miRNA: 3'- uCUUa----GGUGGCU--------------ACCGGUa--GCCGUca -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 31410 | 0.67 | 0.492935 |
Target: 5'- ----cCCAgCGAUGGCCAgcaagCGGCuGg -3' miRNA: 3'- ucuuaGGUgGCUACCGGUa----GCCGuCa -5' |
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11926 | 5' | -55.3 | NC_003278.1 | + | 31851 | 0.67 | 0.492935 |
Target: 5'- aGGaAAUCCGCCGc--GCCGcCGGCGGg -3' miRNA: 3'- -UC-UUAGGUGGCuacCGGUaGCCGUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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