Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 11869 | 0.69 | 0.363923 |
Target: 5'- cGGCAUGGuCCACCgCGGCgauggUGCCGaggCGg -3' miRNA: 3'- aCUGUAUC-GGUGG-GUCGa----GCGGUa--GC- -5' |
|||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 19843 | 0.69 | 0.34553 |
Target: 5'- cGAUGUcGGCCACCCAGgcggugaCUCG-CAUCGa -3' miRNA: 3'- aCUGUA-UCGGUGGGUC-------GAGCgGUAGC- -5' |
|||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 5296 | 0.69 | 0.337854 |
Target: 5'- cGGCGUGaacuccGCCGUCCAGaccuUCGCCGUCGa -3' miRNA: 3'- aCUGUAU------CGGUGGGUCg---AGCGGUAGC- -5' |
|||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 30317 | 0.71 | 0.289877 |
Target: 5'- aUGACgAUGGCCcuggaGCgCCAGgaCGCCGUCa -3' miRNA: 3'- -ACUG-UAUCGG-----UG-GGUCgaGCGGUAGc -5' |
|||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 8969 | 0.71 | 0.28242 |
Target: 5'- aUGAUGUGGCguucgaacaggaUugCCGGCUUGCCGUUGc -3' miRNA: 3'- -ACUGUAUCG------------GugGGUCGAGCGGUAGC- -5' |
|||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 34523 | 0.72 | 0.240854 |
Target: 5'- gUGGCAUGGCCACCUcaggaaugcgGGCgucCGCUcgCGu -3' miRNA: 3'- -ACUGUAUCGGUGGG----------UCGa--GCGGuaGC- -5' |
|||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 10425 | 0.72 | 0.234443 |
Target: 5'- cGGCGUccacucGGCCAgC-AGCUCGCCGUUGg -3' miRNA: 3'- aCUGUA------UCGGUgGgUCGAGCGGUAGC- -5' |
|||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 9064 | 0.72 | 0.221448 |
Target: 5'- cGGCAUAGCCGCCCgggcgagGGUUCaCCAgcgCGg -3' miRNA: 3'- aCUGUAUCGGUGGG-------UCGAGcGGUa--GC- -5' |
|||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 14826 | 0.73 | 0.204516 |
Target: 5'- aUGcCGUAGCCGCCCAGC--GUgGUCGg -3' miRNA: 3'- -ACuGUAUCGGUGGGUCGagCGgUAGC- -5' |
|||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 32213 | 0.77 | 0.103051 |
Target: 5'- cGACugggccAGaCCGCCCAGCUCGCCgcaGUCGu -3' miRNA: 3'- aCUGua----UC-GGUGGGUCGAGCGG---UAGC- -5' |
|||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 15803 | 1.1 | 0.000386 |
Target: 5'- uUGACAUAGCCACCCAGCUCGCCAUCGg -3' miRNA: 3'- -ACUGUAUCGGUGGGUCGAGCGGUAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home