Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11929 | 3' | -60.9 | NC_003278.1 | + | 3009 | 0.68 | 0.202482 |
Target: 5'- cGGGCGACAccgcgggucuGgUGGUGguGGCgccuccgGCGGUa -3' miRNA: 3'- aCCCGUUGU----------CgACCGCguCCG-------UGCCA- -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 3983 | 0.68 | 0.20857 |
Target: 5'- aGGcGCGGaucCAGCgcuaccagGGCGguGGUACGGa -3' miRNA: 3'- aCC-CGUU---GUCGa-------CCGCguCCGUGCCa -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 5638 | 0.67 | 0.228389 |
Target: 5'- cGGGgAACuuggcccaggcgucgAGCaUGGCGUAGGUgauuGCGGUg -3' miRNA: 3'- aCCCgUUG---------------UCG-ACCGCGUCCG----UGCCA- -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 5758 | 0.66 | 0.264482 |
Target: 5'- --uGCAGCAGCgGGUugGC-GGCGCGGUu -3' miRNA: 3'- accCGUUGUCGaCCG--CGuCCGUGCCA- -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 7462 | 0.66 | 0.293002 |
Target: 5'- cUGGGCcuugucguuGCcGCUGGUGguGGUgucguaccaGCGGUa -3' miRNA: 3'- -ACCCGu--------UGuCGACCGCguCCG---------UGCCA- -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 8431 | 0.69 | 0.159143 |
Target: 5'- cGGGCGccGCAGCgcugguagcagaccaGGCGCAG-CGCGGc -3' miRNA: 3'- aCCCGU--UGUCGa--------------CCGCGUCcGUGCCa -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 8596 | 0.66 | 0.271395 |
Target: 5'- aGGGCGGCGacGUUGcCGCGGGaACGGa -3' miRNA: 3'- aCCCGUUGU--CGACcGCGUCCgUGCCa -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 9125 | 0.71 | 0.12684 |
Target: 5'- aGGGCGGCGGUaucgucgaucUGGCGagcguucgcCAGGCGCuGGUg -3' miRNA: 3'- aCCCGUUGUCG----------ACCGC---------GUCCGUG-CCA- -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 9441 | 0.7 | 0.150116 |
Target: 5'- gUGGGUAcaGCAGCagcgcaucgaccUGGCGCAGGCcCGc- -3' miRNA: 3'- -ACCCGU--UGUCG------------ACCGCGUCCGuGCca -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 9605 | 0.74 | 0.077869 |
Target: 5'- aGcGGCAGCAGCUGcGC-CAGGCGCuGGc -3' miRNA: 3'- aC-CCGUUGUCGAC-CGcGUCCGUG-CCa -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 10560 | 0.71 | 0.123301 |
Target: 5'- aGGGCAGCacgagGGcCUGGCucgaGGGCGCGGa -3' miRNA: 3'- aCCCGUUG-----UC-GACCGcg--UCCGUGCCa -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 11963 | 0.66 | 0.257713 |
Target: 5'- gGGGCGuuccauucGCGGUcGGCGCcGGCccGCGGc -3' miRNA: 3'- aCCCGU--------UGUCGaCCGCGuCCG--UGCCa -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 13311 | 0.67 | 0.244601 |
Target: 5'- gGGGCGACGGUcGGCGUcguugagguAGGCGuCGa- -3' miRNA: 3'- aCCCGUUGUCGaCCGCG---------UCCGU-GCca -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 13671 | 0.66 | 0.293002 |
Target: 5'- aGGGCuuCGGC-GGC-CAGGCGCu-- -3' miRNA: 3'- aCCCGuuGUCGaCCGcGUCCGUGcca -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 13732 | 0.71 | 0.122257 |
Target: 5'- cGGGCAggugcugggguuccACAGUUGGCGCAauGGgAuCGGUa -3' miRNA: 3'- aCCCGU--------------UGUCGACCGCGU--CCgU-GCCA- -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 14634 | 0.67 | 0.238255 |
Target: 5'- -cGGCAACGGCcuggucGGCGguGGCgauuugucuGCGGa -3' miRNA: 3'- acCCGUUGUCGa-----CCGCguCCG---------UGCCa -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 17431 | 0.68 | 0.21424 |
Target: 5'- cUGGGCGAUGGCgaUGaGUGCGguagcgaccGGCugGGUa -3' miRNA: 3'- -ACCCGUUGUCG--AC-CGCGU---------CCGugCCA- -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 17599 | 1.06 | 0.000202 |
Target: 5'- cUGGGCAACAGCUGGCGCAGGCACGGUc -3' miRNA: 3'- -ACCCGUUGUCGACCGCGUCCGUGCCA- -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 19061 | 0.66 | 0.300498 |
Target: 5'- -cGGCGAuCAcCUGGcCGCAGGCAaggaGGUc -3' miRNA: 3'- acCCGUU-GUcGACC-GCGUCCGUg---CCA- -5' |
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11929 | 3' | -60.9 | NC_003278.1 | + | 19381 | 0.67 | 0.225977 |
Target: 5'- aGGuCAGCAccgcGCUGGCcgcgcaaCAGGCACGGg -3' miRNA: 3'- aCCcGUUGU----CGACCGc------GUCCGUGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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