miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11929 3' -60.9 NC_003278.1 + 22116 0.68 0.192332
Target:  5'- -cGGCAGCAGCacGC-CGGGCAgGGUg -3'
miRNA:   3'- acCCGUUGUCGacCGcGUCCGUgCCA- -5'
11929 3' -60.9 NC_003278.1 + 32833 0.69 0.172412
Target:  5'- aGGGCcACGG-UGGCGCGGGUccGCGa- -3'
miRNA:   3'- aCCCGuUGUCgACCGCGUCCG--UGCca -5'
11929 3' -60.9 NC_003278.1 + 8431 0.69 0.159143
Target:  5'- cGGGCGccGCAGCgcugguagcagaccaGGCGCAG-CGCGGc -3'
miRNA:   3'- aCCCGU--UGUCGa--------------CCGCGUCcGUGCCa -5'
11929 3' -60.9 NC_003278.1 + 29811 0.7 0.154355
Target:  5'- cUGGGuCAGcCAGC-GGCGCAGGCccgccuUGGUc -3'
miRNA:   3'- -ACCC-GUU-GUCGaCCGCGUCCGu-----GCCA- -5'
11929 3' -60.9 NC_003278.1 + 9441 0.7 0.150116
Target:  5'- gUGGGUAcaGCAGCagcgcaucgaccUGGCGCAGGCcCGc- -3'
miRNA:   3'- -ACCCGU--UGUCG------------ACCGCGUCCGuGCca -5'
11929 3' -60.9 NC_003278.1 + 28421 0.71 0.130473
Target:  5'- cGGGCGACAGCccGCGC-GGCGucUGGUg -3'
miRNA:   3'- aCCCGUUGUCGacCGCGuCCGU--GCCA- -5'
11929 3' -60.9 NC_003278.1 + 9125 0.71 0.12684
Target:  5'- aGGGCGGCGGUaucgucgaucUGGCGagcguucgcCAGGCGCuGGUg -3'
miRNA:   3'- aCCCGUUGUCG----------ACCGC---------GUCCGUG-CCA- -5'
11929 3' -60.9 NC_003278.1 + 10560 0.71 0.123301
Target:  5'- aGGGCAGCacgagGGcCUGGCucgaGGGCGCGGa -3'
miRNA:   3'- aCCCGUUG-----UC-GACCGcg--UCCGUGCCa -5'
11929 3' -60.9 NC_003278.1 + 13732 0.71 0.122257
Target:  5'- cGGGCAggugcugggguuccACAGUUGGCGCAauGGgAuCGGUa -3'
miRNA:   3'- aCCCGU--------------UGUCGACCGCGU--CCgU-GCCA- -5'
11929 3' -60.9 NC_003278.1 + 31628 0.71 0.116496
Target:  5'- cUGGGCGGCGGCgc-CGCAGGCuucaacCGGg -3'
miRNA:   3'- -ACCCGUUGUCGaccGCGUCCGu-----GCCa -5'
11929 3' -60.9 NC_003278.1 + 33922 0.72 0.103926
Target:  5'- gUGGGUuuccacGCGGCUGGUGUAGcCGCGGa -3'
miRNA:   3'- -ACCCGu-----UGUCGACCGCGUCcGUGCCa -5'
11929 3' -60.9 NC_003278.1 + 30859 0.73 0.090006
Target:  5'- cUGGGCGaucgGCAGCaGGCGUuucaGCGCGGUg -3'
miRNA:   3'- -ACCCGU----UGUCGaCCGCGuc--CGUGCCA- -5'
11929 3' -60.9 NC_003278.1 + 9605 0.74 0.077869
Target:  5'- aGcGGCAGCAGCUGcGC-CAGGCGCuGGc -3'
miRNA:   3'- aC-CCGUUGUCGAC-CGcGUCCGUG-CCa -5'
11929 3' -60.9 NC_003278.1 + 17599 1.06 0.000202
Target:  5'- cUGGGCAACAGCUGGCGCAGGCACGGUc -3'
miRNA:   3'- -ACCCGUUGUCGACCGCGUCCGUGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.