miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1193 5' -55.1 NC_001132.2 + 134211 0.66 0.941416
Target:  5'- --gCG-CGCGUCCGGCGU--UCGUAc -3'
miRNA:   3'- cagGCaGCGCAGGUCGCAuuGGCAUa -5'
1193 5' -55.1 NC_001132.2 + 45291 0.67 0.909261
Target:  5'- aUCCGUCGUcugucGUCCucuaaCGUAGCCGUc- -3'
miRNA:   3'- cAGGCAGCG-----CAGGuc---GCAUUGGCAua -5'
1193 5' -55.1 NC_001132.2 + 41352 0.67 0.903065
Target:  5'- -aCCGUCGCaauaUCCGGCGUGuUCGUu- -3'
miRNA:   3'- caGGCAGCGc---AGGUCGCAUuGGCAua -5'
1193 5' -55.1 NC_001132.2 + 130683 0.69 0.820347
Target:  5'- uUCUGUauaCGCGU-CGGCGUAGCUGUAc -3'
miRNA:   3'- cAGGCA---GCGCAgGUCGCAUUGGCAUa -5'
1193 5' -55.1 NC_001132.2 + 156339 0.7 0.765899
Target:  5'- -cUCGUguagGCGUCCGGCGUGAUCGUc- -3'
miRNA:   3'- caGGCAg---CGCAGGUCGCAUUGGCAua -5'
1193 5' -55.1 NC_001132.2 + 132015 0.76 0.438984
Target:  5'- uUCCGuuUCGCGUucCCAGCGU-ACCGUGUa -3'
miRNA:   3'- cAGGC--AGCGCA--GGUCGCAuUGGCAUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.