miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11930 5' -54.4 NC_003278.1 + 6792 0.65 0.658294
Target:  5'- -uUCGUCGGgcaugucGGCCU-GGUCGGUg--- -3'
miRNA:   3'- guAGCAGCU-------UCGGAuCCAGCCGgaac -5'
11930 5' -54.4 NC_003278.1 + 21297 0.66 0.636563
Target:  5'- gAUCGUCcaGGGCCU-GGUgaaCGGCCUg- -3'
miRNA:   3'- gUAGCAGc-UUCGGAuCCA---GCCGGAac -5'
11930 5' -54.4 NC_003278.1 + 27430 0.66 0.614815
Target:  5'- ---gGUCGGAGCCggaggaaagauacuGGUUGGCgUUGg -3'
miRNA:   3'- guagCAGCUUCGGau------------CCAGCCGgAAC- -5'
11930 5' -54.4 NC_003278.1 + 8312 0.66 0.613671
Target:  5'- gGUCGUCGAAGUCgaccuuGUCGacccaggcgaccGCCUUGa -3'
miRNA:   3'- gUAGCAGCUUCGGauc---CAGC------------CGGAAC- -5'
11930 5' -54.4 NC_003278.1 + 16694 0.68 0.534611
Target:  5'- uGUCGUCG-AGCUggcGGUCGcGCCa-- -3'
miRNA:   3'- gUAGCAGCuUCGGau-CCAGC-CGGaac -5'
11930 5' -54.4 NC_003278.1 + 6194 0.68 0.523574
Target:  5'- aCGUCGUCGAGGaCUAcGGccUCGGCUg-- -3'
miRNA:   3'- -GUAGCAGCUUCgGAU-CC--AGCCGGaac -5'
11930 5' -54.4 NC_003278.1 + 31677 0.68 0.523574
Target:  5'- --aCGUCGAGGCCcauUGGGaauGCCUUGg -3'
miRNA:   3'- guaGCAGCUUCGG---AUCCagcCGGAAC- -5'
11930 5' -54.4 NC_003278.1 + 23100 0.7 0.419078
Target:  5'- --cCGUCGuAGCUgucgcGGUCGGCCUg- -3'
miRNA:   3'- guaGCAGCuUCGGau---CCAGCCGGAac -5'
11930 5' -54.4 NC_003278.1 + 19138 0.7 0.390259
Target:  5'- --aCGUCacGGCC-AGGUCGGCCaUGg -3'
miRNA:   3'- guaGCAGcuUCGGaUCCAGCCGGaAC- -5'
11930 5' -54.4 NC_003278.1 + 4714 0.7 0.390259
Target:  5'- -uUCGcCGAcaccggcaaGGCCUAcuuGGUCGGCCUg- -3'
miRNA:   3'- guAGCaGCU---------UCGGAU---CCAGCCGGAac -5'
11930 5' -54.4 NC_003278.1 + 18379 1.08 0.000763
Target:  5'- uCAUCGUCGAAGCCUAGGUCGGCCUUGa -3'
miRNA:   3'- -GUAGCAGCUUCGGAUCCAGCCGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.