Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11931 | 3' | -55.8 | NC_003278.1 | + | 19874 | 1.12 | 0.000337 |
Target: 5'- gCGUCGAACUCGUAGCCCACGCCGAGCa -3' miRNA: 3'- -GCAGCUUGAGCAUCGGGUGCGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 9841 | 0.75 | 0.180928 |
Target: 5'- gGUCGAGCguaUCGgccUGGCCUggGCCGAGUg -3' miRNA: 3'- gCAGCUUG---AGC---AUCGGGugCGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 22914 | 0.74 | 0.201797 |
Target: 5'- gCGUCGGACUCGUuGgCCugGUCcAGCu -3' miRNA: 3'- -GCAGCUUGAGCAuCgGGugCGGcUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 5662 | 0.74 | 0.21646 |
Target: 5'- gCGUCGcgcagcagggccugGACUCGgggaacuUGGCCCagGCGUCGAGCa -3' miRNA: 3'- -GCAGC--------------UUGAGC-------AUCGGG--UGCGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 5887 | 0.72 | 0.256458 |
Target: 5'- gCGUCGAGguuCUUGUAGUCgGCGUCG-GCg -3' miRNA: 3'- -GCAGCUU---GAGCAUCGGgUGCGGCuCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 29301 | 0.72 | 0.263229 |
Target: 5'- -aUCGcAC-CGgcGgCCACGCCGAGCa -3' miRNA: 3'- gcAGCuUGaGCauCgGGUGCGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 13733 | 0.72 | 0.263229 |
Target: 5'- cCGUCGAucGCUgGgacAGCaCCugGCCgGAGCg -3' miRNA: 3'- -GCAGCU--UGAgCa--UCG-GGugCGG-CUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 21752 | 0.71 | 0.30692 |
Target: 5'- uGUCGAuggUGaUGGCCUGCGCCGGGg -3' miRNA: 3'- gCAGCUugaGC-AUCGGGUGCGGCUCg -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 21300 | 0.71 | 0.322668 |
Target: 5'- gGUCGAugccCagGUAGCCCaggACGCCG-GCg -3' miRNA: 3'- gCAGCUu---GagCAUCGGG---UGCGGCuCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 32703 | 0.71 | 0.322668 |
Target: 5'- gCGaCGGAgUaCGU-GCCUugGCCGGGCg -3' miRNA: 3'- -GCaGCUUgA-GCAuCGGGugCGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 14990 | 0.71 | 0.330766 |
Target: 5'- aCGUUGca-UCGccGCUCGCGCUGAGCg -3' miRNA: 3'- -GCAGCuugAGCauCGGGUGCGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 23173 | 0.7 | 0.339012 |
Target: 5'- ---aGAGCgcccugcgCGccGCCCGCGCCGAGUg -3' miRNA: 3'- gcagCUUGa-------GCauCGGGUGCGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 21847 | 0.7 | 0.339012 |
Target: 5'- uG-CGGugUCGcuGCCCGCGCCG-GCc -3' miRNA: 3'- gCaGCUugAGCauCGGGUGCGGCuCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 20272 | 0.7 | 0.339012 |
Target: 5'- gGcCGuACUCGcGGCCgACGCCG-GCg -3' miRNA: 3'- gCaGCuUGAGCaUCGGgUGCGGCuCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 9397 | 0.7 | 0.347406 |
Target: 5'- aGUUGGcguguuGCUCGUAgGCUCGCG-CGAGCu -3' miRNA: 3'- gCAGCU------UGAGCAU-CGGGUGCgGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 3974 | 0.7 | 0.364637 |
Target: 5'- gGUCGAuuucCUUGUAGUCC-CGCCGGu- -3' miRNA: 3'- gCAGCUu---GAGCAUCGGGuGCGGCUcg -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 26694 | 0.69 | 0.39157 |
Target: 5'- uGUCGAACuucuucaggUCGaGGCCCAgG-CGGGCg -3' miRNA: 3'- gCAGCUUG---------AGCaUCGGGUgCgGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 28131 | 0.68 | 0.449158 |
Target: 5'- uGUCGAccaggguguagaGCUCcuuuuuGCCgCACGUCGGGCa -3' miRNA: 3'- gCAGCU------------UGAGcau---CGG-GUGCGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 15038 | 0.68 | 0.449158 |
Target: 5'- gCGUCaGGACUCcguugacguuuGUGGCCCcauCGaaCCGAGCu -3' miRNA: 3'- -GCAG-CUUGAG-----------CAUCGGGu--GC--GGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 28761 | 0.68 | 0.449158 |
Target: 5'- aGUUGGGCUgcuucgcagaCGUAGCCCAgGgCGcGCg -3' miRNA: 3'- gCAGCUUGA----------GCAUCGGGUgCgGCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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