miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11931 5' -55.9 NC_003278.1 + 20114 0.66 0.557989
Target:  5'- uCAGCagUGUCGCCGaG-GUcCAUgucGCCCGc -3'
miRNA:   3'- -GUCGa-ACAGCGGC-CaCAuGUA---CGGGC- -5'
11931 5' -55.9 NC_003278.1 + 17330 0.66 0.557989
Target:  5'- aGGcCUUcaUGCCGGUGUACuUGCCa- -3'
miRNA:   3'- gUC-GAAcaGCGGCCACAUGuACGGgc -5'
11931 5' -55.9 NC_003278.1 + 20401 0.66 0.546886
Target:  5'- cCAGCUUGgcuacCGCCu-UGgACGUGCCCa -3'
miRNA:   3'- -GUCGAACa----GCGGccACaUGUACGGGc -5'
11931 5' -55.9 NC_003278.1 + 31840 0.66 0.535855
Target:  5'- aAGCggauguauugGUCGCgGGUGaACAgguccagcagggUGCCCGg -3'
miRNA:   3'- gUCGaa--------CAGCGgCCACaUGU------------ACGGGC- -5'
11931 5' -55.9 NC_003278.1 + 7087 0.67 0.492587
Target:  5'- -cGCUugagGUCGCCGGUGgucgggGCGucacUGCUCa -3'
miRNA:   3'- guCGAa---CAGCGGCCACa-----UGU----ACGGGc -5'
11931 5' -55.9 NC_003278.1 + 21545 0.68 0.410447
Target:  5'- aGGC-UGUCGCCGGccucgACGgggaguuUGCCCGa -3'
miRNA:   3'- gUCGaACAGCGGCCaca--UGU-------ACGGGC- -5'
11931 5' -55.9 NC_003278.1 + 17550 0.69 0.365072
Target:  5'- cCAGC-UGUUGCCcaggcacuGGgcuUGCGUGCCCGg -3'
miRNA:   3'- -GUCGaACAGCGG--------CCac-AUGUACGGGC- -5'
11931 5' -55.9 NC_003278.1 + 22698 0.74 0.164722
Target:  5'- uCGGUUUcGUCGaCGGUGUAgGUGCCCu -3'
miRNA:   3'- -GUCGAA-CAGCgGCCACAUgUACGGGc -5'
11931 5' -55.9 NC_003278.1 + 6029 0.79 0.073054
Target:  5'- gCGGCcUGcCGCCGGUGgaagugcccUACGUGCCCGa -3'
miRNA:   3'- -GUCGaACaGCGGCCAC---------AUGUACGGGC- -5'
11931 5' -55.9 NC_003278.1 + 19840 1.08 0.000561
Target:  5'- gCAGCUUGUCGCCGGUGUACAUGCCCGu -3'
miRNA:   3'- -GUCGAACAGCGGCCACAUGUACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.