miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11932 5' -60.2 NC_003278.1 + 3898 0.66 0.323196
Target:  5'- gGGUucAGGUCGGUuuccguaccaccGCCCuGGUAGCgCu -3'
miRNA:   3'- gCCG--UCCAGCUA------------CGGGuCCAUCGgGu -5'
11932 5' -60.2 NC_003278.1 + 21656 0.67 0.292585
Target:  5'- cCGGCGccaUCGGUGCCCuGGUgcucGGCgCCAg -3'
miRNA:   3'- -GCCGUcc-AGCUACGGGuCCA----UCG-GGU- -5'
11932 5' -60.2 NC_003278.1 + 19032 0.67 0.292585
Target:  5'- uCGGcCGGGUCcAUGCC--GGUGGCCUc -3'
miRNA:   3'- -GCC-GUCCAGcUACGGguCCAUCGGGu -5'
11932 5' -60.2 NC_003278.1 + 18299 0.67 0.28242
Target:  5'- gGGCAGGgugcaggacuucaCGAcGCCCuGGUAGCUa- -3'
miRNA:   3'- gCCGUCCa------------GCUaCGGGuCCAUCGGgu -5'
11932 5' -60.2 NC_003278.1 + 11939 0.67 0.27815
Target:  5'- cCGGCccgcGG-CGAUGCCCAaGGcAGCCa- -3'
miRNA:   3'- -GCCGu---CCaGCUACGGGU-CCaUCGGgu -5'
11932 5' -60.2 NC_003278.1 + 28302 0.68 0.257569
Target:  5'- gCGcCAGGUCGAaGCCgcgggcaugggcCAGGUAcGCCCGg -3'
miRNA:   3'- -GCcGUCCAGCUaCGG------------GUCCAU-CGGGU- -5'
11932 5' -60.2 NC_003278.1 + 12684 0.68 0.23825
Target:  5'- -uGCAGGggGAUGCUCAGGUugugcGGCUCGu -3'
miRNA:   3'- gcCGUCCagCUACGGGUCCA-----UCGGGU- -5'
11932 5' -60.2 NC_003278.1 + 21698 0.71 0.142476
Target:  5'- uGGCGccGG-CGcucuUGCCCAGGUcGCCCAg -3'
miRNA:   3'- gCCGU--CCaGCu---ACGGGUCCAuCGGGU- -5'
11932 5' -60.2 NC_003278.1 + 22453 0.72 0.127053
Target:  5'- cCGGCGucgcgcugcaacuGGUCGAcggcgcUGgUCAGGUAGCCCGu -3'
miRNA:   3'- -GCCGU-------------CCAGCU------ACgGGUCCAUCGGGU- -5'
11932 5' -60.2 NC_003278.1 + 21306 1.08 0.000188
Target:  5'- cCGGCAGGUCGAUGCCCAGGUAGCCCAg -3'
miRNA:   3'- -GCCGUCCAGCUACGGGUCCAUCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.