Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11933 | 5' | -62.6 | NC_003278.1 | + | 31185 | 0.67 | 0.202596 |
Target: 5'- nGUgUUUGuCCGcUGGGCCAGGgCGGCc -3' miRNA: 3'- aCGgGAGCuGGU-ACCCGGUCCgGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 31219 | 0.68 | 0.172601 |
Target: 5'- aGUCCUCGcACCAgagggcgcugGGcGCCAGGCgGGu -3' miRNA: 3'- aCGGGAGC-UGGUa---------CC-CGGUCCGgCUg -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 31801 | 0.67 | 0.219228 |
Target: 5'- gUGCCCgggacacCGGCCA-GGcGCUcgaagucgcggAGGCCGGCc -3' miRNA: 3'- -ACGGGa------GCUGGUaCC-CGG-----------UCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 33892 | 0.69 | 0.159139 |
Target: 5'- cGaCCUCG-CUggGGugacaGCCAGGCCGACa -3' miRNA: 3'- aCgGGAGCuGGuaCC-----CGGUCCGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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