miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11933 5' -62.6 NC_003278.1 + 31219 0.68 0.172601
Target:  5'- aGUCCUCGcACCAgagggcgcugGGcGCCAGGCgGGu -3'
miRNA:   3'- aCGGGAGC-UGGUa---------CC-CGGUCCGgCUg -5'
11933 5' -62.6 NC_003278.1 + 33892 0.69 0.159139
Target:  5'- cGaCCUCG-CUggGGugacaGCCAGGCCGACa -3'
miRNA:   3'- aCgGGAGCuGGuaCC-----CGGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 12345 0.69 0.154867
Target:  5'- cGCCCUCGcCCGcuUGGcacacauccGCCAGucgaucGCCGACa -3'
miRNA:   3'- aCGGGAGCuGGU--ACC---------CGGUC------CGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 12337 0.69 0.154867
Target:  5'- cGCCCgguaugaCGccGCCGUGGGuaugaccgaCCAGGCUGAUg -3'
miRNA:   3'- aCGGGa------GC--UGGUACCC---------GGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 9549 0.69 0.150699
Target:  5'- gGCCCUCGAggccgcccuuucCCGcgagcgccaGGcCCAGGCCGACc -3'
miRNA:   3'- aCGGGAGCU------------GGUac-------CC-GGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 6375 0.69 0.150699
Target:  5'- aUGCCCUgGugCG-GGGCaguGGCCGcCg -3'
miRNA:   3'- -ACGGGAgCugGUaCCCGgu-CCGGCuG- -5'
11933 5' -62.6 NC_003278.1 + 22491 0.69 0.146633
Target:  5'- cGCCCUgGACC-UGaccgacaaucgcGGCCucgAGGCCGAUc -3'
miRNA:   3'- aCGGGAgCUGGuAC------------CCGG---UCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 19959 0.69 0.135029
Target:  5'- gUGCCCagGGCCAguacuuccUGGGCCGcaCCGGCu -3'
miRNA:   3'- -ACGGGagCUGGU--------ACCCGGUccGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 3615 0.7 0.124275
Target:  5'- cGCCUUgaagaUGugCGcuUGGGCCuugcuGGCCGACa -3'
miRNA:   3'- aCGGGA-----GCugGU--ACCCGGu----CCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 28290 0.7 0.117552
Target:  5'- aGCCg-CGGgCAUGGGCCagguacgcccGGGCCGAg -3'
miRNA:   3'- aCGGgaGCUgGUACCCGG----------UCCGGCUg -5'
11933 5' -62.6 NC_003278.1 + 23240 0.7 0.11432
Target:  5'- cGCgCUCG-CCAgGGGCC-GGCCGGa -3'
miRNA:   3'- aCGgGAGCuGGUaCCCGGuCCGGCUg -5'
11933 5' -62.6 NC_003278.1 + 7806 0.7 0.11432
Target:  5'- gGUCCUCGAggcgaaCCAc-GGCCuGGCCGACc -3'
miRNA:   3'- aCGGGAGCU------GGUacCCGGuCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 4148 0.71 0.099089
Target:  5'- aGaCCCUUcacucauggaagGACCGcgacggaUGGGaCCGGGCCGACa -3'
miRNA:   3'- aC-GGGAG------------CUGGU-------ACCC-GGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 28066 0.71 0.096608
Target:  5'- gUGCCCUUGAUC--GGcGUCAGGCCGuACu -3'
miRNA:   3'- -ACGGGAGCUGGuaCC-CGGUCCGGC-UG- -5'
11933 5' -62.6 NC_003278.1 + 11880 0.72 0.083863
Target:  5'- cUGCCUUgGgcaucGCCGcGGGCCGGcGCCGACc -3'
miRNA:   3'- -ACGGGAgC-----UGGUaCCCGGUC-CGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 14117 0.73 0.074199
Target:  5'- cGCCgUCGAUCGUcgccaggccguggcGGGCCAGGauguCCGGCg -3'
miRNA:   3'- aCGGgAGCUGGUA--------------CCCGGUCC----GGCUG- -5'
11933 5' -62.6 NC_003278.1 + 22492 0.73 0.070681
Target:  5'- uUGCCgUCGACCGUGaGCCGGaacaCCGGCa -3'
miRNA:   3'- -ACGGgAGCUGGUACcCGGUCc---GGCUG- -5'
11933 5' -62.6 NC_003278.1 + 8156 0.75 0.050045
Target:  5'- cGCCCUCGcCCGUGuGCCcuGGCUGACc -3'
miRNA:   3'- aCGGGAGCuGGUACcCGGu-CCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 17096 0.75 0.048618
Target:  5'- cGUCUUCGGCgGUGGcuaCCAGGCCGAUg -3'
miRNA:   3'- aCGGGAGCUGgUACCc--GGUCCGGCUG- -5'
11933 5' -62.6 NC_003278.1 + 21462 0.76 0.044571
Target:  5'- gGCCCagGGCCucggcgccGGCCAGGCCGGCc -3'
miRNA:   3'- aCGGGagCUGGuac-----CCGGUCCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.