miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11934 3' -50.7 NC_003278.1 + 20844 0.66 0.855102
Target:  5'- cCCUCGCCGGCAUucucgg----CCCGa -3'
miRNA:   3'- -GGAGCGGUCGUAcccuuuuuuaGGGC- -5'
11934 3' -50.7 NC_003278.1 + 1649 0.66 0.854212
Target:  5'- aCUCGCCGGCcUGcGGGucu-AUCCg- -3'
miRNA:   3'- gGAGCGGUCGuAC-CCUuuuuUAGGgc -5'
11934 3' -50.7 NC_003278.1 + 31822 0.66 0.826329
Target:  5'- uCC-CGCCGGUuggcGGGAGGcAAcCCCGg -3'
miRNA:   3'- -GGaGCGGUCGua--CCCUUUuUUaGGGC- -5'
11934 3' -50.7 NC_003278.1 + 33680 0.66 0.826329
Target:  5'- gCUCGCCcuGGUAgcGGAAGuAGAUCCUGa -3'
miRNA:   3'- gGAGCGG--UCGUacCCUUU-UUUAGGGC- -5'
11934 3' -50.7 NC_003278.1 + 28288 0.66 0.826329
Target:  5'- --cCGCgGGCAUGGGccAGGuacgCCCGg -3'
miRNA:   3'- ggaGCGgUCGUACCCuuUUUua--GGGC- -5'
11934 3' -50.7 NC_003278.1 + 32105 0.67 0.806572
Target:  5'- gCUCGCCAGaCGcGGGAcgu--UCUCGa -3'
miRNA:   3'- gGAGCGGUC-GUaCCCUuuuuuAGGGC- -5'
11934 3' -50.7 NC_003278.1 + 16603 0.68 0.764689
Target:  5'- uCCUCGCCAGCGac-GAucAAcAGUCCCu -3'
miRNA:   3'- -GGAGCGGUCGUaccCU--UUuUUAGGGc -5'
11934 3' -50.7 NC_003278.1 + 21550 0.68 0.73162
Target:  5'- -gUCGCCGGCcucgacGGGGAGuuugCCCGa -3'
miRNA:   3'- ggAGCGGUCGua----CCCUUUuuuaGGGC- -5'
11934 3' -50.7 NC_003278.1 + 23243 0.68 0.720354
Target:  5'- gCUCGCCAGgGgccggccGGAccuGAUCCCGg -3'
miRNA:   3'- gGAGCGGUCgUac-----CCUuuuUUAGGGC- -5'
11934 3' -50.7 NC_003278.1 + 27463 0.7 0.639483
Target:  5'- aCUCGcCCAGCGcgccUGGGAcGAGGUCUUc -3'
miRNA:   3'- gGAGC-GGUCGU----ACCCUuUUUUAGGGc -5'
11934 3' -50.7 NC_003278.1 + 4814 0.7 0.604456
Target:  5'- cCCUCGCCAGCc--GcAAGAccAAUCCCGa -3'
miRNA:   3'- -GGAGCGGUCGuacCcUUUU--UUAGGGC- -5'
11934 3' -50.7 NC_003278.1 + 4767 0.71 0.592819
Target:  5'- gCCUUGCCGGUGucggcgaacuUGGGAuc-GAUCUCGa -3'
miRNA:   3'- -GGAGCGGUCGU----------ACCCUuuuUUAGGGC- -5'
11934 3' -50.7 NC_003278.1 + 25891 1.13 0.000942
Target:  5'- aCCUCGCCAGCAUGGGAAAAAAUCCCGg -3'
miRNA:   3'- -GGAGCGGUCGUACCCUUUUUUAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.