miRNA: 3'- -UGGCACCuaAAGA-CGA--AGa----CCGU-GCG- -5'
miRNA: 3'- uggCACCuaaa----GACGA-----AGACCGugCG- -5'
miRNA: 3'- -UGGCACCUaaaGACGAAGaCCGUGcG- -5'
miRNA: 3'- -UGGCACCUAAAGACGAAGACCGUGCG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11934 | 5' | -52.3 | NC_003278.1 | + | 30018 | 0.67 | 0.703232 |
|
Target: 5'- cACCGUGGcgUUCUgGCUcaUCaccagGGUGcCGCg -3' miRNA: 3'- -UGGCACCuaAAGA-CGA--AGa----CCGU-GCG- -5' |
|||||||
| 11934 | 5' | -52.3 | NC_003278.1 | + | 34656 | 0.67 | 0.69177 |
|
Target: 5'- --aGUGGcgaugccgCUGCUgagcaUCUGGCugGCg -3' miRNA: 3'- uggCACCuaaa----GACGA-----AGACCGugCG- -5' |
|||||||
| 11934 | 5' | -52.3 | NC_003278.1 | + | 29536 | 0.7 | 0.507768 |
|
Target: 5'- gGCUGUGGAc--CUGCUUC-GGCGC-Ca -3' miRNA: 3'- -UGGCACCUaaaGACGAAGaCCGUGcG- -5' |
|||||||
| 11934 | 5' | -52.3 | NC_003278.1 | + | 25857 | 1.13 | 0.000604 |
|
Target: 5'- uACCGUGGAUUUCUGCUUCUGGCACGCg -3' miRNA: 3'- -UGGCACCUAAAGACGAAGACCGUGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home