Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11935 | 3' | -59.1 | NC_003278.1 | + | 28591 | 1.1 | 0.000253 |
Target: 5'- aUGGCCGACACGGCGUCGAUGCCGUGGu -3' miRNA: 3'- -ACCGGCUGUGCCGCAGCUACGGCACC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 32353 | 0.75 | 0.097519 |
Target: 5'- gGGCCG--GCGGCGUCGAUaucGCCG-GGc -3' miRNA: 3'- aCCGGCugUGCCGCAGCUA---CGGCaCC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 31765 | 0.73 | 0.156426 |
Target: 5'- aGGCCGGC-CGGguccaCGUCGAUGCCa--- -3' miRNA: 3'- aCCGGCUGuGCC-----GCAGCUACGGcacc -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 28263 | 0.72 | 0.165173 |
Target: 5'- gGGCCGAgGCGGCGgguuccuugUCGGUGgCCGg-- -3' miRNA: 3'- aCCGGCUgUGCCGC---------AGCUAC-GGCacc -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 21529 | 0.72 | 0.174358 |
Target: 5'- gGGCCGGCcuggcCGGCGcCGAgGCCcUGGg -3' miRNA: 3'- aCCGGCUGu----GCCGCaGCUaCGGcACC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 14629 | 0.71 | 0.199331 |
Target: 5'- cUGGCCGGCaACGGCcugGUCG--GCgGUGGc -3' miRNA: 3'- -ACCGGCUG-UGCCG---CAGCuaCGgCACC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 32969 | 0.71 | 0.204685 |
Target: 5'- -cGCCGGCGCGGUGUCG--GCCaGUGc -3' miRNA: 3'- acCGGCUGUGCCGCAGCuaCGG-CACc -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 22085 | 0.7 | 0.239478 |
Target: 5'- cUGGCCGGCAgcGCGUUGA-GCC-UGGa -3' miRNA: 3'- -ACCGGCUGUgcCGCAGCUaCGGcACC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 32767 | 0.7 | 0.245104 |
Target: 5'- gGuGCCGGCugGGCcgucccaGUCGGUGaCCG-GGu -3' miRNA: 3'- aC-CGGCUGugCCG-------CAGCUAC-GGCaCC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 30506 | 0.69 | 0.258659 |
Target: 5'- gUGGCCGACGCGGCaacccugcgCGAccUGCUGa-- -3' miRNA: 3'- -ACCGGCUGUGCCGca-------GCU--ACGGCacc -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 8040 | 0.69 | 0.264653 |
Target: 5'- aGGCCGAgGCccaugauGGCGcCG--GCCGUGGc -3' miRNA: 3'- aCCGGCUgUG-------CCGCaGCuaCGGCACC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 29872 | 0.69 | 0.286161 |
Target: 5'- -cGCCGGCGCGGCuguuGUCGcUGCgGUcGGc -3' miRNA: 3'- acCGGCUGUGCCG----CAGCuACGgCA-CC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 22886 | 0.69 | 0.293387 |
Target: 5'- -uGCUGACACgccugGGCGaggacuUCGAUGCgGUGGc -3' miRNA: 3'- acCGGCUGUG-----CCGC------AGCUACGgCACC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 20261 | 0.68 | 0.300755 |
Target: 5'- cGGCCGACGcCGGCGgaguacuucagCGAgucGCCGa-- -3' miRNA: 3'- aCCGGCUGU-GCCGCa----------GCUa--CGGCacc -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 30954 | 0.68 | 0.300755 |
Target: 5'- aGGCCGcGCAgcuCGGUgagGUCGAaGCgGUGGg -3' miRNA: 3'- aCCGGC-UGU---GCCG---CAGCUaCGgCACC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 9278 | 0.68 | 0.300755 |
Target: 5'- aGcGCCGGguCGGUGUCGAUGaaGcGGa -3' miRNA: 3'- aC-CGGCUguGCCGCAGCUACggCaCC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 8607 | 0.68 | 0.300755 |
Target: 5'- aUGGCCucaGCAgGGCGgCGAcguUGCCGcGGg -3' miRNA: 3'- -ACCGGc--UGUgCCGCaGCU---ACGGCaCC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 31867 | 0.68 | 0.308265 |
Target: 5'- -cGCCGGCG-GGCGcCGAccggaUGCCGUGu -3' miRNA: 3'- acCGGCUGUgCCGCaGCU-----ACGGCACc -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 19789 | 0.68 | 0.308265 |
Target: 5'- cGGCCaGCGCGGCagcgcucUgGAUGCCGcGGc -3' miRNA: 3'- aCCGGcUGUGCCGc------AgCUACGGCaCC- -5' |
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11935 | 3' | -59.1 | NC_003278.1 | + | 1603 | 0.68 | 0.308265 |
Target: 5'- aGGCCGGCGagcUGGuCGUCGcgGCUGa-- -3' miRNA: 3'- aCCGGCUGU---GCC-GCAGCuaCGGCacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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