miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11936 3' -63.1 NC_003278.1 + 27685 0.66 0.262237
Target:  5'- gAUUaCUGGGUGUGCUgGG-GGCGCUGu -3'
miRNA:   3'- -UGGcGGCCCACAUGGaCCaCCGCGGC- -5'
11936 3' -63.1 NC_003278.1 + 2922 0.66 0.249365
Target:  5'- uGCCGCCcGGU--ACCgccGGaGGCGCCa -3'
miRNA:   3'- -UGGCGGcCCAcaUGGa--CCaCCGCGGc -5'
11936 3' -63.1 NC_003278.1 + 30244 0.66 0.231042
Target:  5'- gGCC-CUGGucgacgcgcUGcGCCUGGUGGUGCCGc -3'
miRNA:   3'- -UGGcGGCCc--------ACaUGGACCACCGCGGC- -5'
11936 3' -63.1 NC_003278.1 + 31436 0.66 0.231042
Target:  5'- aGCCGCCGacguGGuUGUgcuaGCCU--UGGCGCCGc -3'
miRNA:   3'- -UGGCGGC----CC-ACA----UGGAccACCGCGGC- -5'
11936 3' -63.1 NC_003278.1 + 12412 0.66 0.231042
Target:  5'- gACUGgCGGauGUGUGCCaagcGGgcgagGGCGCCGc -3'
miRNA:   3'- -UGGCgGCC--CACAUGGa---CCa----CCGCGGC- -5'
11936 3' -63.1 NC_003278.1 + 5894 0.67 0.225192
Target:  5'- cACCGCCGuGacccggGCCUGGUGGUgauccucgGCCGc -3'
miRNA:   3'- -UGGCGGC-Ccaca--UGGACCACCG--------CGGC- -5'
11936 3' -63.1 NC_003278.1 + 21627 0.67 0.225192
Target:  5'- gGCCauGCUGGGcg-ACCUGGgcaaGaGCGCCGg -3'
miRNA:   3'- -UGG--CGGCCCacaUGGACCa---C-CGCGGC- -5'
11936 3' -63.1 NC_003278.1 + 20082 0.67 0.203036
Target:  5'- gGCUGCCaGGUugagcaUGCCgGGcaUGGCGCCGa -3'
miRNA:   3'- -UGGCGGcCCAc-----AUGGaCC--ACCGCGGC- -5'
11936 3' -63.1 NC_003278.1 + 3002 0.67 0.192684
Target:  5'- cACCG-CGGGUcUGgUggUGGUGGCGCCu -3'
miRNA:   3'- -UGGCgGCCCAcAUgG--ACCACCGCGGc -5'
11936 3' -63.1 NC_003278.1 + 21538 0.68 0.178023
Target:  5'- -aCGCCcagcGGGccgGCCUGGccGGCGCCGa -3'
miRNA:   3'- ugGCGG----CCCacaUGGACCa-CCGCGGC- -5'
11936 3' -63.1 NC_003278.1 + 2703 0.68 0.173361
Target:  5'- -aCGCCGGcUGgaccgACCUGGcccaGGCGCUGa -3'
miRNA:   3'- ugGCGGCCcACa----UGGACCa---CCGCGGC- -5'
11936 3' -63.1 NC_003278.1 + 29554 0.68 0.173361
Target:  5'- -gCGCCaaGG---GCCUGGUGGCGCUGg -3'
miRNA:   3'- ugGCGGc-CCacaUGGACCACCGCGGC- -5'
11936 3' -63.1 NC_003278.1 + 21057 0.68 0.168808
Target:  5'- cGCCGUCGuGGcgGUG-CUGGccGGCGCCGc -3'
miRNA:   3'- -UGGCGGC-CCa-CAUgGACCa-CCGCGGC- -5'
11936 3' -63.1 NC_003278.1 + 21413 0.69 0.155786
Target:  5'- cGCCGUcgCGGGUGUucgccgACCUGGgcgGGUucaccaugGCCGg -3'
miRNA:   3'- -UGGCG--GCCCACA------UGGACCa--CCG--------CGGC- -5'
11936 3' -63.1 NC_003278.1 + 28713 0.94 0.001475
Target:  5'- cACCGCCGGGUGUACCUGuG-GGCGCCGg -3'
miRNA:   3'- -UGGCGGCCCACAUGGAC-CaCCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.