miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11936 5' -55.4 NC_003278.1 + 9666 0.66 0.578883
Target:  5'- gCCAGCGCCUGGcgCAGcugcugccgcugUUGGuCAGg -3'
miRNA:   3'- aGGUCGCGGGUCuaGUCaa----------AGCC-GUC- -5'
11936 5' -55.4 NC_003278.1 + 20282 0.66 0.56084
Target:  5'- gCUGGCGUCCAGggCAGcauggcCGGCAc -3'
miRNA:   3'- aGGUCGCGGGUCuaGUCaaa---GCCGUc -5'
11936 5' -55.4 NC_003278.1 + 32674 0.66 0.549641
Target:  5'- cCCcGCGgCCAGA---GUUUCGGCAa -3'
miRNA:   3'- aGGuCGCgGGUCUaguCAAAGCCGUc -5'
11936 5' -55.4 NC_003278.1 + 9294 0.66 0.549641
Target:  5'- cUUCAGCGCCUuguguagcgccGGGUCGGUgUCGaugaaGCGGa -3'
miRNA:   3'- -AGGUCGCGGG-----------UCUAGUCAaAGC-----CGUC- -5'
11936 5' -55.4 NC_003278.1 + 14080 0.66 0.538512
Target:  5'- gUCCGGCGUgaugcgcagguCCAGGcgggUCAGgugUCGGCuGa -3'
miRNA:   3'- -AGGUCGCG-----------GGUCU----AGUCaa-AGCCGuC- -5'
11936 5' -55.4 NC_003278.1 + 31917 0.67 0.505624
Target:  5'- gUCGGCGCCCGccggCGGcg-CGGCGGa -3'
miRNA:   3'- aGGUCGCGGGUcua-GUCaaaGCCGUC- -5'
11936 5' -55.4 NC_003278.1 + 27638 0.67 0.473628
Target:  5'- -aUAGCggGCCgGGAUCGGgaagCGGCAGu -3'
miRNA:   3'- agGUCG--CGGgUCUAGUCaaa-GCCGUC- -5'
11936 5' -55.4 NC_003278.1 + 28651 0.68 0.463189
Target:  5'- cCCGGCGCCCA---CAGguacaccCGGCGGu -3'
miRNA:   3'- aGGUCGCGGGUcuaGUCaaa----GCCGUC- -5'
11936 5' -55.4 NC_003278.1 + 2636 0.68 0.442681
Target:  5'- aUCAGCGCcugggCCAGGUCGGUccagcCGGCGu -3'
miRNA:   3'- aGGUCGCG-----GGUCUAGUCAaa---GCCGUc -5'
11936 5' -55.4 NC_003278.1 + 5950 0.7 0.331439
Target:  5'- aCCAG-GCCCGGGUCA----CGGCGGu -3'
miRNA:   3'- aGGUCgCGGGUCUAGUcaaaGCCGUC- -5'
11936 5' -55.4 NC_003278.1 + 2538 0.7 0.323152
Target:  5'- -aUAGCGCCCAGGcCAGa-UCGGCGu -3'
miRNA:   3'- agGUCGCGGGUCUaGUCaaAGCCGUc -5'
11936 5' -55.4 NC_003278.1 + 13781 0.7 0.31261
Target:  5'- cCCAGCgaucgacggagaacGCCCAGGcCAGguaCGGCAGa -3'
miRNA:   3'- aGGUCG--------------CGGGUCUaGUCaaaGCCGUC- -5'
11936 5' -55.4 NC_003278.1 + 19155 0.71 0.299221
Target:  5'- gUCCGGCGCCCAGugaaacGUCAcGgccaggUCGGCc- -3'
miRNA:   3'- -AGGUCGCGGGUC------UAGU-Caa----AGCCGuc -5'
11936 5' -55.4 NC_003278.1 + 21735 0.72 0.248771
Target:  5'- cUCGGCGCCagCGGcaGUCAGUaUCGGCGGc -3'
miRNA:   3'- aGGUCGCGG--GUC--UAGUCAaAGCCGUC- -5'
11936 5' -55.4 NC_003278.1 + 22018 0.74 0.17881
Target:  5'- gCCGGCGCgCCAGuucGUCGGUcgCGGCGa -3'
miRNA:   3'- aGGUCGCG-GGUC---UAGUCAaaGCCGUc -5'
11936 5' -55.4 NC_003278.1 + 29199 0.78 0.100403
Target:  5'- aCCAGUGCCCAGGUCg----CGGCGGc -3'
miRNA:   3'- aGGUCGCGGGUCUAGucaaaGCCGUC- -5'
11936 5' -55.4 NC_003278.1 + 28678 1.08 0.000554
Target:  5'- gUCCAGCGCCCAGAUCAGUUUCGGCAGc -3'
miRNA:   3'- -AGGUCGCGGGUCUAGUCAAAGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.